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Adapter Error Log Analysis Task

Error Report Examples of Detailed Error Reports Example of a Summary Error Report Interpreting Device Sense Data Generating an Error Report Stopping an Error Log Cleaning an Error Log Copying an Error Log to Diskette or Tape Reading an Error Report To obtain a report of all errors logged in the 24 hours prior to the failure, enter: errpt -a -s mmddhhmmyy | pg where mmddhhmmyy represents the month, day, hour, minute, and year 24 hours prior to the failure. An error log report contains the following information: Note: Not all errors will generate information for each of the following categories. LABEL Predefined name for the event. ID Numerical identifier for the event. Date/Time Date and time of the event. Sequence Number Unique number for the event. Machine ID Identification number of your system processor unit. Node ID Mnemonic name of your system. Class General source of the error. The possible error classes are: H Hardware. (When you receive a hardware error, refer to your system operator guide for information about performing diagnostics on the problem device or other piece of equipment. The diagnostics program tests the device and analyze the error log entries related to it to determine the state of the device.) S Software. O Informational messages. U Undetermined (for example, a network). Type Severity of the error that has occurred. Five types of errors are possible: PEND The loss of availability of a device or component is imminent. PERF The performance of the device or component has degraded to below an acceptable level. PERM Condition that could not be recovered from. Error types with this value are usually the most severe errors and are more likely to mean that you have a defective hardware device or software module. Error types other than PERM usually do not indicate a defect, but they are recorded so that they can be analyzed by the diagnostics programs. TEMP Condition that was rec

[ -e] | [ -d Device [ -c ] [ -v ] [ -e ] [ -A ] ] | [ -B [ -c ] ] | [ -T taskname] | [ -S testsuite] Description The diag command is the starting point to run a wide choice of tasks and service aids. Most of the tasks/service aids are platform specific. The following http://ps-2.kev009.com/tl/techlib/manuals/adoclib/aixprob/prbslvgd/errlogts.htm tasks and service aids are available: Run Diagnostics Display or Change Diagnostic Run Time Options Display Service Hints Display Previous Diagnostic Results Display Hardware Error Report Display Software Product Data Display Configuration and Resource List Display Hardware Vital Product Data Display Resource Attributes Change Hardware Vital Product Data Format Media Certify Media Display Test Patterns http://ps-2.kev009.com/wisclibrary/aix52/usr/share/man/info/en_US/a_doc_lib/cmds/aixcmds2/diag.htm Local Area Network Analyzer Add Resource to Resource List Delete Resource from Resource List SCSI Bus Analyzer Download Microcode Display or Change Bootlist Periodic Diagnostics Backup and Restore Media Disk Maintenance Configure Dials and LPFkeys Add or Delete Drawer Config Create Customized Configuration Diskette Update Disk Based Diagnostics Configure ISA Adapter Operating System Shell Prompt (Online Service Mode only) Display or Change Multiprocessor Configuration Enable and disable individual processors Display or change BUMP Configuration Update the flash EPROM with a new binary image Display or change diagnostic modes Display or change remote phone numbers and modem configurations Display or Change Electronic Mode Switch Process Supplemental Media (Standalone Mode only) Generic Microcode Download Run Error Log Analysis Service Aids for Use with Ethernet Update System Flash in AIX 5.1 and earlier (RSPC) Configure Ring Indicate Power-On in AIX 5.1 and earlier (RSPC) Configure Service Processor in AIX 5.1 and earlier (RSPC) Save or Restore Service Processor Configuration in AIX 5.1 and earlier (RSPC) Display Mac

[-E days] ] | [-B] | [-T taskname] [-S http://blake.ism.u-bordeaux1.fr/doc_link/C/a_doc_lib/cmds/aixcmds2/diag.htm testsuite] Description The diag command is the starting point to run a wide choice of tasks and service aids. Most of the tasks/service aids are platform specific. https://github.com/PacificBiosciences/SMRT-Analysis/issues/197 The following tasks and service aids are available: Run Diagnostics Display or Change Diagnostic Run Time Options Display Service Hints Display Previous Diagnostic Results Display Hardware adapter error Error Report Display Software Product Data Display Configuration and Resource List Display Hardware Vital Product Data Display Resource Attributes Change Hardware Vital Product Data Format Media Certify Media Display Test Patterns Local Area Network Analyzer Add Resource to Resource List Delete Resource from Resource List SCSI Bus Analyzer Download Microcode Display or adapter error log Change Bootlist Periodic Diagnostics Backup and Restore Media Disk Maintenance Configure Dials and LPFkeys Add or Delete Drawer Config Create Customized Configuration Diskette Update Disk Based Diagnostics Configure ISA Adapter AIX Shell Prompt (Online Service Mode only) Display or Change Multiprocessor Configuration Enable and disable individual processors Display or change BUMP Configuration Update the flash EPROM with a new binary image Display or change diagnostic modes Display or change remote phone numbers and modem configurations Display or Change Electronic Mode Switch Process Supplemental Media (Standalone Mode only) Generic Microcode Download Run Error Log Analysis Service Aids for Use with Ethernet Update System Flash (RSPC) Configure Ring Indicate Power-On (RSPC) Configure Service Processor (RSPC) Save or Restore Service Processor Configuration (RSPC) Display Machine Check Error Log (RSPC) 7135 RAIDiant Array Service Aids SCSI Device Identification and Removal SCSD Tape Drive Service Aid Escon Bit Error Rate Service Aid SSA Service Aid PCI RAID Physical Disk Identify Configu

Support Search GitHub This repository Watch 55 Star 73 Fork 36 PacificBiosciences/SMRT-Analysis Code Issues 76 Pull requests 0 Projects 0 Wiki Pulse Graphs New issue smrt assembly issue: task adapterRpt FAILED #197 Closed newlbs opened this Issue Apr 18, 2015 · 5 comments Projects None yet Labels None yet Milestone No milestone Assignees jkaralius 3 participants newlbs commented Apr 18, 2015 Hi, I am trying to do genome assembly using pacbio reads through command line. I had the test data working so I assume my smrt anaysis package is installed correctly. However when I tried to run my own data, it failed at the early step as shown in the smrtpipe.log: [INFO] 2015-04-18 10:25:05,435 Successfully found 4 files in xml:input.xml [INFO] 2015-04-18 10:25:05,496 smrtpipe.py running on bhc0079 [INFO] 2015-04-18 10:25:05,496 SMRT Analysis 2.3.0 / SMRTpipe 1.87.139483 [INFO] 2015-04-18 10:25:07,639 Process id 18492 [INFO] 2015-04-18 10:25:13,446 Starting task://Anonymous/P_Fetch/toFofn [INFO] 2015-04-18 10:25:13,447 task P_Fetch.toFofn successfully completed (0.00 sec (0.00 min)). freed 1 slots, using 0 slots. [INFO] 2015-04-18 10:25:13,448 Workflow Completion Status 1/47 in ( 2%) tasks completed. [INFO] 2015-04-18 10:25:18,476 Starting task://Anonymous/P_Mapping/align.plsFofn.Scatter [INFO] 2015-04-18 10:25:18,476 Starting task://Anonymous/P_Fetch/overviewRpt [INFO] 2015-04-18 10:25:18,476 Starting task://Anonymous/P_Fetch/adapterRpt [INFO] 2015-04-18 10:25:18,479 task P_Mapping.align.plsFofn.Scatter successfully completed (0.00 sec (0.00 min)). freed 1 slots, using 2 slots. [INFO] 2015-04-18 10:25:18,479 Workflow Completion Status 2/47 in ( 4%) tasks completed. [ERROR] 2015-04-18 10:25:18,479 *** Failed task task://Anonymous/P_Fetch/adapterRpt [INFO] 2015-04-18 10:25:19,845 task P_Fetch.overviewRpt successfully completed (1.00 sec (0.02 min)). freed 1 slots, using 1 slots. [INFO] 2015-04-18 10:25:19,845 Workflow Completion Status 3/47 in ( 6%) tasks completed. [INFO] 2015-04-18 10:25:19,846 Found 1 failed tasks. [INFO] 2015-04-18 10:25:19,846 task adapterRpt FAILED Failed smrtpipe version v1.87.139483 with exit code -1 in 15.66 sec

 

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