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Operationalerror: Deadlock Detected

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Postgresql Deadlock

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Hint: See Server Log For Query Details.

4 down vote favorite 1 I'm trying to insert some files into a Postgres database. Since lots of duplication is expected, we put the files themselves into the file table, then link them to the section of the database we're using with the output_file table. As the file table is also referenced by tables other than output_file (for example, the similar input_file table), one of its postgresql deadlock detected columns is a reference count, which is updated by a trigger when rows are inserted into output_file (and the other tables, too, although they aren't being used at the times the problem occurs). CREATE TABLE file ( file_id serial PRIMARY KEY, --other columns occurences integer NOT NULL DEFAULT 0 ); CREATE TABLE output_file ( output_file_id serial PRIMARY KEY, --other columns file_id integer REFERENCES file NOT NULL ); CREATE OR REPLACE FUNCTION file_insert() RETURNS opaque AS ' BEGIN UPDATE file SET occurences = occurences + 1 WHERE file.file_id = NEW.file_id; RETURN NEW; END; ' LANGUAGE plpgsql; CREATE TRIGGER output_file_insert AFTER INSERT ON output_file FOR EACH ROW EXECUTE PROCEDURE file_insert(); The code that inserts the files is shown below, and is all one transaction. private void insertFiles(Set files){ SortedSet outputFileIDs = new TreeSet(); PreparedStatement fileExistsStatement = getFileExistsStatement(); for(File file : files) { try { int fileID = -1; ResultSet rs = /* Query to see if file already present in file table */ if(rs.next()) { // File found fileID = rs.getInt(1); } if(fileID < 0) { /* File does not exist, upload it */ rs = /* Query to get file ID */ fileID = rs.getInt(1); } outputFileIDs.add(fileID); } catch(FileNo

Sign in Pricing Blog Support Search GitHub select for update postgres This repository Watch 38 Star 128 Fork 77 IQSS/dataverse Code Issues 706 Pull requests 13 Projects 1 Pulse Graphs New issue PSQLException: ERROR: deadlock detected running integration tests #2460 Open pdurbin opened this Issue Aug 14, 2015 · 7 comments Projects None http://stackoverflow.com/questions/6841703/why-are-my-queries-deadlocking yet Labels Component: API Status: Triaged Type: Bug Milestone No milestone Assignees No one assigned 6 participants Institute for Quantitative Social Science member pdurbin commented Aug 14, 2015 Running integration tests such as mvn test -Dtest=SearchIT is causing deadlocks. I'm https://github.com/IQSS/dataverse/issues/2460 not sure why. An example stacktrace is below. These integration tests are normal API calls. I'm not touching the database directly or anything. I'm on commit 35c42ad. Passing to @scolapasta for review. [2015-08-14T16:57:04.687-0400] [glassfish 4.1] [WARNING] [] [org.eclipse.persistence.session.file:/Users/pdurbin/NetBeansProjects/dataverse/target/dataverse-4.2/WEB-INF/classes/_VDCNet-ejbPU] [tid: _ThreadID=142 _ThreadName=http-listener-1(3)] [timeMillis: 1439585824687] [levelValue: 900] [[ Local Exception Stack: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException Internal Exception: org.postgresql.util.PSQLException: ERROR: deadlock detected Detail: Process 18486 waits for ShareLock on transaction 2306911; blocked by process 18491. Process 18491 waits for ShareLock on transaction 2306909; blocked by process 18486. Hint: See server log for query details. Error Code: 0 Call: UPDATE DVOBJECT SET PERMISSIONINDEXTIME = ? WHERE (ID = ?) bind => [2 parameters bound] Query: UpdateObjectQuery([Dataset id:846 ]) at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340) at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.processExceptionForCommError(DatabaseAccessor.java:1611) at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:898) at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeNoSelect(DatabaseAccessor.j

pgsql-announce pgsql-bugs pgsql-docs pgsql-general pgsql-interfaces pgsql-jobs pgsql-novice pgsql-performance pgsql-php pgsql-sql pgsql-students Developer lists Regional lists Associations User groups Project lists https://www.postgresql.org/message-id/B6086934-76C2-4BFC-A34B-931276E359CB@rvt.dds.nl Inactive lists IRC Local User Groups Featured Users International Sites Propaganda Resources Weekly News Need help with : org.postgresql.util.PSQLException : ERROR: deadlock detected From: https://forums.activiti.org/content/deadlock-while-updating-process-variable-runtimeservicesetvariable-multiple-threads ries van Twisk To: General postgres mailing list Subject: Need help with : org.postgresql.util.PSQLException : ERROR: deadlock detected Date: 2009-04-01 12:20:48 Message-ID: B6086934-76C2-4BFC-A34B-931276E359CB@rvt.dds.nl deadlock detected (view raw or whole thread) Thread: 2009-04-01 12:20:48 from ries van Twisk Lists: pgsql-general hey all, I have a stored procedure that updates a couple of tables within my database. org.postgresql.util.PSQLException : ERROR: deadlock detected Detail: Process 31580 waits for AccessExclusiveLock on relation 289553 of database 285107; blocked by psqlexception error deadlock process 16024. Process 16024 waits for AccessShareLock on relation 289471 of database 285107; blocked by process 31580. All tables in that database are heavy readed, and only my stored procedure copies some data within a table. The process within my stored procedure is like this but I have a couple of these within my stored procedure: LOCK TABLE mytable IN ACCESS EXCLUSIVE MODE; ALTER TABLE mytable DISABLE TRIGGER trg_mytable_log; CREATE TEMPORARY TABLE mytemptable AS SELECT * FROM mytable WHERE country_code=_country_code_to; CREATE TEMPORARY TABLE mytemptable_log AS SELECT * FROM mytable_log WHERE country_code=_country_code_to; CREATE INDEX tmytemptable_idx ON mytemptable(part_num, vehicle_names_item_id,country_code); DELETE FROM mytable where country_code=_country_code_to; DELETE FROM mytable_log where country_code=_country_code_to; INSERT INTO mytable (p..............) SELECT . FROM mytable WHERE .................... INSERT INTO mytable_log (...........) SELECT ........ FROM mytable_log WHERE ............. INSERT INTO mytable SELECT * FROM mytemptable WHERE .......... INSERT INTO mytable_log SELECT * FROM mytemptable_log WHERE ................. UPDATE mytabl

multiple threads 6 posts / 0 new Log in or register to post comments Last post Thu, 05/23/2013 - 10:05 #1 zaki Offline Last seen: 3 years 4 months ago Joined: 04/08/2013 - 07:22 Posts: 3 Deadlock while updating process variable (runTimeService.setVariable()) from multiple threads Using runTimeService.setVariable(myExecutionId, myVariableName, someValue); to set the processVariable from multiple threads results in a database deadlock. Running Activiti version: 5.12.1 12:42:34:185 WARN [org.hibernate.engine.jdbc.spi.SqlExceptionHelper] (http--0.0.0.0-8080-2) SQL Error: 0, SQLState: 40P01 12:42:34:187 ERROR [org.hibernate.engine.jdbc.spi.SqlExceptionHelper] (http--0.0.0.0-8080-2) ERROR: deadlock detected Detail: Process 31789 waits for ShareLock on transaction 90486; blocked by process 31791. Process 31791 waits for ShareLock on transaction 90485; blocked by process 31789. Hint: See server log for query details. 12:42:34:191 ERROR [org.activiti.engine.impl.interceptor.CommandContext] (http--0.0.0.0-8080-2) Error while closing command context: org.apache.ibatis.exceptions.PersistenceException: ### Error updating database. Cause: org.hibernate.exception.GenericJDBCException: ERROR: deadlock detected Detail: Process 31789 waits for ShareLock on transaction 90486; blocked by process 31791. Process 31791 waits for ShareLock on transaction 90485; blocked by process 31789. Hint: See server log for query details. ### The error may involve org.activiti.engine.impl.persistence.entity.VariableInstanceEntity.updateByteArray_postgres-Inline ### The error occurred while setting parameters ### SQL: update ACT_GE_BYTEARRAY set REV_ = ?, BYTES_ = ? where ID_ = ? and REV_ = ? ### Cause: org.hibernate.exception.GenericJDBCException: ERROR: deadlock detected Detail: Process 31789 waits for ShareLock on transaction 90486; blocked by process 31791. Process 31791 waits for ShareLock on transaction 90485; blocked by process 31789. Hint: See server lo

 

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