Error Cannot Initialize Readdb
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cancel Report adult content: click to rate: Account: (login) More Channels Showcase RSS Channel Showcase 2107870 RSS Channel Showcase 4000825 RSS Channel Showcase 1340811 RSS Channel Showcase 1562984 Channel Catalog Subsection Catalog Articles on this Page (showing articles 2981 to 3000 of 14675) 06/11/11--17:26: _Help With Rps-Blast... 07/26/10--14:10: _Creating A Dna Sequ... 03/20/13--15:49: _The Meaning Of The ... 05/10/13--12:32: _Are Alignment Lengt... 04/09/12--16:00: _Problems Using Form... 12/04/13--05:14: _Strange Behaviour O... 12/31/11--13:51: _Create Blast Databa... 04/16/14--10:58: _blast -F F equivale... 04/03/12--10:25: _Blast Database Sequ... 11/14/12--13:08: _Almost Nothing Mapp... 04/28/13--14:19: _I Use https://sourceforge.net/p/biskit/mailman/message/24149910/ Blastdbcmd Co... 05/24/11--18:48: _Blast Formatdb, Mul... 06/20/14--09:06: _Obtaining the top m... 04/06/14--10:22: _How To Get Status U... 12/19/10--14:25: _Blastx For A Millio... 03/21/12--17:00: _Ncbi-Blast+ Version... 01/31/12--14:34: _Blast+ Error Code=12 10/07/11--09:06: _[Fastacmd] How To R... 05/24/13--07:59: _How To Merge Contig... 09/17/10--20:35: _How To Parse Psibla... (showing articles 2981 to 3000 of 14675) Browse the Latest Snapshot Browsing All Articles (14675 Articles) Live Browser Channel Description: Posts that http://biostar9.rssing.com/chan-9878198/all_p150.html match blast, older | 1 | .... | 147 | 148 | 149 | (Page 150) | 151 | 152 | 153 | .... | 734 | newer 0 0 06/11/11--17:26: Help With Rps-Blast With New Blast Contact us about this article Hi I want to make rpsblast with the new blast 2.2.25 with rpstblastn. But I need to format the database. I think for the older blast version you use formatrpsdb and it´s create others files including .aux, but for this new version I dont know what to use. I tried this makeblastdb -in Pfam-A.fasta -title Pfam -logfile pfam But it just creates .psq .pin and .phr, and if I use rpstblastn it says that canot find the .aux file I hope someone can help me!!! Thanks!
0 0 07/26/10--14:10: Creating A Dna Sequence Database Locally For Blastplus Contact us about this article Hi, I have a fasta file containing cDNA sequences and I would like to create a blastable database for blastplus, (using blastn) that I have installed locally. I am, however, unsuccessful up to now as I end up creating a PROTEIN database, although my file obviously contains DNA sequencC Formatting large FASTA files D Piping a database to formatdb without uncompressing http://141.80.164.19/bioinf_dokus/blastall/README_db.htm E Creating custom databases. F General http://informaciona.com/error-error-cannot-initialize-readdb-for-nr-database/videos troubleshooting tips. G "SeqIdParse Failure" error H "FileOpen" error Appendix 1: The Files Produced by Formatdb Introduction ------------ Formatdb must be used in order to format protein or nucleotide source databases before these databases error cannot can be searched by blastall, blastpgp or MegaBLAST. The source database may be in either FASTA or ASN.1 format. Although the FASTA format is most often used as input to formatdb, the use of ASN.1 is advantageous for those who are using ASN.1 as the common source for other formats such as the GenBank error cannot initialize report. Once a source database file has been formatted by formatdb it is not needed by BLAST. Please note that if you are going to apply periodic updates to your BLAST databases using fmerge (ftp://ftp.ncbi.nih.gov/blast/fmerge/README), you will need to keep the source database file. If you are having problems formatting a BLAST databases please scroll down to the "Formatdb Notes/Troubleshooting" section below. Or contact the BLAST Desk at blast-help@ncbi.nlm.nih.gov Command Line Options -------------------- A list of the command line options for formatdb may be obtained by executing formatdb without options, as in: formatdb - The formatdb options are summarized below: formatdb arguments: -t Title for database file [String] Optional -i Input file for formatting (this parameter must be set) [File In] -l Logfile name: [File Out] Optional default = formatdb.log -p Type of file T - protein F - nucleotide [T/F] Optional def
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