Error Reading Input Name List
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Contacts News & Events The Walter Kohn Prize News Archive Past Events SEARCH Forum FAQ 1 Installation 2 Pseudopotentials 3 Input data 4 Parallel execution 5 Frequent errors during execution 6 Self Consistency 7 Phonons 5 Frequent errors during execution error reading input file 5.1 What do forrtl: severe (59): list-directed I/O syntax error, unit 5, file stdin error reading input file stale nfs file handle or similar errors mean? 5.2 Why is my job crashing with segmentation fault? 5.3 The code crashes with a mysterious error in error reading input file openssl IOTK 5.4 The code stops with an error in davcio 5.5 Why is the code saying Wrong atomic coordinates? 5.6 The code stops with a wrong charge error 5.7 The code stops with an error quantum espresso error reading namelist control in cdiaghg or rdiaghg 5.8 The code stops with an error in routine scale_h 5.9 The code stops with error reading namelist XXX 5.1 What do errors like "forrtl: severe (59): list-directed I/O syntax error, unit 5, file stdin" mean? "forrtl" = fortran run-time library (so it is a fortran error) "list-directed I/O syntax error" = there was an error while reading or writing (see below) "unit 5″ = fortran unit
Cell_factor Quantum Espresso
(5 is typically used to read input data) "stdin" = standard input (i.e. terminal input, or redirection) Typical case: you are reading data from terminal or from file like this: "code < data-file", and there is an error in what you typed or in "data-file". Yes, there is one. No, it's your data that is incorrect, not our code that doesn't work. Yes, there is an error, look more carefully, it's there even if you do not see it! If there isn't really one, see Item 4.4 in this FAQ. 5.2 Why is my job crashing with "segmentation fault"? Possible reasons: too much memory requested; executable or mathematical libraries compiled for a different hardware; some incompatibility between compiler and mathematical libraries; flaky hardware; bug in compiler or in mathematical libraries. The latter two are typically not reproducible on different architectures or compilers; code bugs may sometimes be elusive, but typically yield a more reproducible pattern of problems. Segmentation faults in tests and examples almost invariably point to a problem in the compiler or in the mathematical libraries or in their interactions. Mysterious, unpredictable, erratic errors in parallel execution are almost always coming from bugs in the compiler or/and in the MPI libraries and sometimes even from flaky hardware. Sorry, not our fa
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Error In Routine Pw_readfile (1): Error Opening Xml Data File
questions you might have Meta Discuss the workings and policies of reading namelist ions this site About Us Learn more about Stack Overflow the company Business Learn more about forrtl: severe (59): list-directed i/o syntax error hiring developers or posting ads with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow http://www.quantum-espresso.org/faq/frequent-errors-during-execution/ is a community of 4.7 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign up Error reading entity from input stream on null list up vote 0 down vote favorite I'm attempting to call a REST endpoint that returns JSON for a validated civic address. On https://stackoverflow.com/questions/38670034/error-reading-entity-from-input-stream-on-null-list a successful call, I get back something like this: { "success":true, "results":[ { "civicnumberid":123456, "civic_address_as_string":"123 Main Street, My City, My Municipality, My County", "esri_point":{ "x":12345.678, "y":54321.012 } } ], "error":null } However if I send a request in a format that the service can't handle, I back back something like this: { "success":false, "results":null, "error":{ "code":123, "message":"Invalid Civic Address. Valid Example: 123 Main St, My City...", "details":[ "The civic address submitted to the service contained an alphabetic character where a number was expected." ] } } Note the "results": null. While attempting to convert the response using JAX-RS 2.0 and Jackson 2.5.1: ResponseObject response = client.target(url) .path(REST_REQUEST_CONTEXT) .queryParam("search_str", searchAddress) .request(MediaType.APPLICATION_JSON) .get(ResponseObject.class); ... it fails with "Error reading entity from input stream." Here's my current ObjectMapper setup: defaultObjectMapper.configure(SerializationFeature.WRAP_ROOT_VALUE, true) .configure(DeserializationFeature.UNWRAP_ROOT_VALUE, true) .configure(DeserializationFeature.UNWRAP_SINGLE_VALUE_ARRAYS, true) .configure(DeserializationFeature.ACCEPT_SINGLE_VALUE_AS_ARRAY, true) .configure(DeserializationFeature.ACCEPT_EMPTY_ARRAY_AS_NULL_OBJECT, true) .configure(DeserializationFeature.ACCEPT_EMPTY_STRING_AS_NULL_OBJECT, true) My ResponseObject is a JAXB object: public class ResponseObject implements Serializable { private final static long serialVersionUID
:-*Error in routine read_namelists (1):**reading namelist ions*Input :-&CONTROLcalculation = 'relax' ,pseudo_dir = '/home/vishalgupta/GB' http://pw_forum.pwscf.narkive.com/iR3wTJ8L/pw-x-error-reading-namelist-ions ,prefix = 'Ni_exc1' ,/&SYSTEMibrav = 2,celldm(1) = 3.52,nat = 47,ntyp = 1,ecutwfc = 20 ,/&ELECTRONSmixing_beta = 0.7 ,diagonalization = 'cg' ,/ATOMIC_SPECIESNi 58.69340 Ni.pz-hgh.UPFATOMIC_POSITIONS alatNi http://mailman.ucar.edu/pipermail/wrf-users/2014/003412.html 14.934095219 4.978031740 10.000000000...K_POINTS automatic6 6 6 0 0 0Output :-MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLDwith errorcode 1.NOTE: invoking MPI_ABORT causes Open error reading MPI to kill all MPI processes.You may or may not see output from other processes, depending onexactly when Open MPI kills them.Parallel version (MPI), running on 20 processorsR & G space division: proc/nbgrp/npool/nimage = 20Reading input from a.inError in routine read_namelists (1):reading namelist ionsTHANK YOUVishal GuptaB.Tech. 2nd year MechanicalIndian error reading input Institute of Technology RoparRupnagar (140001), Punjab, India.Email :- ***@iitrpr.ac.in Ari P Seitsonen 2015-06-09 16:55:42 UTC PermalinkRaw Message Dear Vishal Gupta,Isn't it obvious: The namelist '&ions' is indeed not present in yourinput; this is required, even if being empty, when doing "calculation ='relax'".Greetings from Paris,apsi-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=-Ari Paavo Seitsonen / ***@iki.fi / http://www.iki.fi/~apsi/Ecole Normale Supérieure (ENS), Département de Chimie, ParisMobile (F) : +33 789 37 24 25 (CH) : +41 79 71 90 935Hi,I am trying to run an input file from QE on High Performance Cluster but it gives the following error :-reading namelist ionsInput :-&CONTROL         calculation = 'relax' ,         pseudo_dir = '/home/vishalgupta/GB' ,           prefix = 'Ni_exc1' , / &SYSTEM            ibrav = 2,ÂÂ
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] Hi , Thanks for all the responses.!! I included all of them except the 3 sections mentioned in the &domain suggestion.We are trying to run for a nested domain using wrf 3.5.1.The problem is same as I have posted before,there is error after running real.exe. I have attached the copies of the error log and namelist file separately Regards, Saimy -------------- next part -------------- An HTML attachment was scrubbed... URL: http://mailman.ucar.edu/pipermail/wrf-users/attachments/20140321/d12765eb/attachment.html -------------- next part -------------- &time_control run_days = 15, run_hours = 0, run_minutes = 0, run_seconds = 0, start_year = 2005, 2005, 2005, start_month = 06, 06, 06, start_day = 01, 01, 01, start_hour = 00, 00, 00, start_minute = 00, 00, 00, start_second = 00, 00, 00, end_year = 2005, 2005, 2005, end_month = 06, 06, 06, end_day = 15, 15, 15, end_hour = 00, 00, 00, end_minute = 00, 00, 00, end_second = 00, 00, 00, interval_seconds = 21600 input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1000, 1000, 1000, restart = .false.,.false., restart_interval = 5000, io_form_history = 2 io_form_restart = 2 io_form_input = 2 io_form_boundary = 2 debug_level = 0 / &domains time_step = 180, 60, 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 2, e_we = 100, 121, 94, e_sn = 100, 121, 91, e_vert = 50, 50, 30, p_top_requested = 5000, 5000, 5000, num_metgrid_levels = 28, 28, 28, num_metgrid_soil_levels = 4, 4, 4, dx = 40000, 10000, 2222.22, dy = 40000, 10000, 2222.22, grid_id = 1, 2, 3, parent_id = 0, 1, 2, i_parent_start = 1, 36, 30, j_parent_start = 1, 37, 30, parent_grid_ratio = 1, 4, 4, parent_time_step_ratio = 1, 3, 3, feedback = 1, smooth_option = 0 / &physics mp_physics = 6, 6, 2, ra_lw_physics = 3, 3, 1, ra_sw_physics = 3, 3, 2, num_land_cat = 20, 20, radt = 30, 30, 30, sf_sfclay_physics = 1, 1, 1, sf_surface_physics = 2, 2, 2, bl_pbl_physics = 1, 1, 1, bldt = 0, 0, 0, cu_physics = 1, 1, 0, cudt = 5, 5, 5, isfflx = 1, 1, sst = 1, 1, ifsnow = 1, 1, icloud = 1, 1, surface_input_source = 1, 1, num_soil_layers = 4, 4, sf_urban_physics = 0, 0, 0, / &fdda / &dynamics w_damping = 0, diff_opt = 1, km_opt = 4, diff_6th_opt = 0, 0, 0, diff_6th_factor = 0.12, 0.12, 0.12, base_temp = 290. damp_opt = 0, zdamp = 5000., 5000., 5000., dampcoef = 0.2, 0.2, 0.2 khdif = 0, 0, 0, kvdif = 0, 0, 0, non_hydrostatic = .true., .true., .true., moist_adv_opt = 1, 1, 1, scalar_adv_opt = 1, 1, 1, / &bdy_control spec_b