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• rss Community Log In Sign Up Add New Post Question: How to resolve Cufflinks Fatal error: Matched on ERROR 0 5 months ago by brian.hermann

Paired T Test Example Problems With Solutions

• 30 United States brian.hermann • 30 wrote: Hi, I've been running some matched pairs t test on ti 84 RNA-seq analysis jobs on the Galaxy test server with PapAnu2 built-in and TopHat ran fine, but Cufflinks failed with matched pairs t test vs two sample t test the following error. I noticed the banner on Usegalaxy indicating some jobs were running on Jetstream and noted the job was queued for Jetstream. I couldn't find any recent posts reporting http://stattrek.com/estimation/mean-difference-pairs.aspx anything like this. Any ideas what I can do to avoid this error? Thanks, Brian Dataset generation errors Dataset 57: Cufflinks on data 91 and data 26: gene expression Tool execution generated the following error message: Fatal error: Matched on ERROR: ERROR:galaxy.util:ERROR: Unable to read builds for site file tool-data/shared/ucsc/ucsc_build_sites.txt ERROR:galaxy.util:ERROR: Unable to read builds for site file tool-data/shared/gbrowse/gbrowse_build_sites.txt The tool produced the following https://biostar.usegalaxy.org/p/17585/ additional output: cufflinks v2.2.1 cufflinks -q --no-update-check -I 300000 -F 0.100000 -j 0.150000 -p 10 -G /jetstream/iu-scratch0/test/jobs/539321/inputs/dataset_774016.dat /jetstream/iu-scratch0/test/jobs/539321/inputs/dataset_776754.dat software error cufflinks • 113 views ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified 5 months ago by Jennifer Hillman Jackson ♦ 20k • written 5 months ago by brian.hermann • 30 0 5 months ago by Jennifer Hillman Jackson ♦ 20k United States Jennifer Hillman Jackson ♦ 20k wrote: Hello, To avoid the problem, use the Main Galaxy server at http://usegalaxy.org. There are always active changes going on when using the Test server. How long this issue will last is an unknown. Thanks, Jen, Galaxy team ADD COMMENT • link written 5 months ago by Jennifer Hillman Jackson ♦ 20k Please log in to add an answer. Similar posts • Search » Cuffdiff Fatal error: Exit code 1 () Error: number of labels must match number of conditions number of labels must match number of conditions Hi! I ran into a problem using Cuffdiff. (I am using a local version of galaxy). When I try to ... Cufflinks error mes

here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings http://stackoverflow.com/questions/29454035/getting-error-formal-argument-label-pos-matched-by-multiple-actual-argument and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring developers or posting ads with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 4.7 million programmers, just like you, helping each other. Join them; t test it only takes a minute: Sign up Getting Error: “ formal argument ”label.pos“ matched by multiple actual arguments” in plotrix::polar.plot up vote 1 down vote favorite I am plotting a radial plot of bearing directions and it gives an error with label.pos argument polar.plot(bear[,2],bear[,1],main="Distribution of Start Points from centre", rp.type="r",labels=c("North","West","South","East"), label.pos=c(90,180,270,0), clockwise=FALSE, radial.labels = "", label.pos=NULL, line.col=c("yellow"),show.radial.grid=FALSE, show.grid.labels=1, radial.lim=c(0,max(bear[,2]), boxed.radial=FALSE)) matched pairs t It gives me an error saying Error in polar.plot(bear[, 2], bear[, 1], main = "Distribution of Start Points from centre", : formal argument "label.pos" matched by multiple actual arguments How do I change the argument to get the direction on the plot ? r plot plotrix share|improve this question edited Apr 5 '15 at 12:17 LyzandeR 16.9k112640 asked Apr 5 '15 at 4:21 Surya Pavan Pynda 296 You have passed the label.pos argument twice and thus the error. –LyzandeR Apr 5 '15 at 12:08 add a comment| 1 Answer 1 active oldest votes up vote 1 down vote accepted The above error can be seen in two occasions which I describe below: In functions one can use only part of the name of an argument and the function will work. Let's see an example: myfun<-function(ab,aa){ ab*aa } Notice that passing one of the arguments as ab and the other one as simple a will work. > myfun(ab=5, a=4) [1] 20 R is able to understand that since the first named argument is ab and the second

 

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