R Barplot Error Bar
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Error Bar In R
Epidemic Curve for the United States Stanford Workshop in Biodemography → Plotting Error Bars in R August 24th, error.bar function r 2009 · 52 Comments · R One common frustration that I have heard expressed about R is that there is no automatic way to plot error bars (whiskers really) on bar barplot with error bars matlab plots. I just encountered this issue revising a paper for submission and figured I'd share my code. The following simple function will plot reasonable error bars on a bar plot. PLAIN TEXT R: error.bar <- function(x, y, upper, lower=upper, length=0.1,...){ if(length(x) != length(y) | length(y) !=length(lower) | length(lower) != length(upper)) stop("vectors must be same length") arrows(x,y+upper, x, y-lower, angle=90, code=3, length=length, ...) }
Summaryse R
Now let's use it. First, I'll create 5 means drawn from a Gaussian random variable with unit mean and variance. I want to point out another mild annoyance with the way that R handles bar plots, and how to fix it. By default, barplot() suppresses the X-axis. Not sure why. If you want the axis to show up with the same line style as the Y-axis, include the argument axis.lty=1, as below. By creating an object to hold your bar plot, you capture the midpoints of the bars along the abscissa that can later be used to plot the error bars. PLAIN TEXT R: y <- rnorm(500, mean=1) y <- matrix(y,100,5) y.means <- apply(y,2,mean) y.sd <- apply(y,2,sd) barx <- barplot(y.means, names.arg=1:5,ylim=c(0,1.5), col="blue", axis.lty=1, xlab="Replicates", ylab="Value (arbitrary units)") error.bar(barx,y.means, 1.96*y.sd/10) Now let's say we want to create the very common plot in reporting the results of scientific experiments: adjacent bars representing the treatment and the control with 95% confidence intervals on the estimates of the means. The trick here is to create a 2 x n matrix of your bar values, where each row holds the
τη γλώσσα σας. Κλείσιμο Μάθετε περισσότερα View this message in English Το YouTube εμφανίζεται στα Ελληνικά. Μπορείτε να αλλάξετε αυτή την προτίμηση errbar r παρακάτω. Learn more You're viewing YouTube in Greek. scatter plot with error bars in r You can change this preference below. Κλείσιμο Ναι, θέλω να τη
R Arrows
κρατήσω Αναίρεση Κλείσιμο Αυτό το βίντεο δεν είναι διαθέσιμο. Ουρά παρακολούθησηςΟυράΟυρά παρακολούθησηςΟυρά Κατάργηση όλωνΑποσύνδεση Φόρτωση... Ουρά παρακολούθησης Ουρά __count__/__total__ http://monkeysuncle.stanford.edu/?p=485 Using R to create a barplot with SEM error bars Aubrie Holman ΕγγραφήΕγγραφήκατεΚατάργηση εγγραφής Φόρτωση... Φόρτωση... Σε λειτουργία... Προσθήκη σε... Θέλετε να το δείτε ξανά αργότερα; Συνδεθείτε για να προσθέσετε το βίντεο σε playlist. Σύνδεση Κοινή χρήση https://www.youtube.com/watch?v=4Y3ZjFRwMX0 Περισσότερα Αναφορά Θέλετε να αναφέρετε το βίντεο; Συνδεθείτε για να αναφέρετε ακατάλληλο περιεχόμενο. Σύνδεση Μεταγραφή Στατιστικά στοιχεία 2.544 προβολές 5 Σας αρέσει αυτό το βίντεο; Συνδεθείτε για να μετρήσει η άποψή σας. Σύνδεση 6 1 Δεν σας αρέσει αυτό το βίντεο; Συνδεθείτε για να μετρήσει η άποψή σας. Σύνδεση 2 Φόρτωση... Φόρτωση... Μεταγραφή Δεν ήταν δυνατή η φόρτωση της διαδραστικής μεταγραφής. Φόρτωση... Φόρτωση... Η δυνατότητα αξιολόγησης είναι διαθέσιμη όταν το βίντεο είναι ενοικιασμένο. Αυτή η λειτουργία δεν είναι διαθέσιμη αυτήν τη στιγμή. Δοκιμάστε ξανά αργότερα. Δημοσιεύτηκε στις 30 Οκτ 2015 Κατηγορία Εκπαίδευση Άδεια Τυπική άδεια YouTube Φόρτωση... Αυτόματη αναπαραγωγή Όταν είναι ενεργοποιημένη η αυτόματη αναπαραγωγή, το επόμενο προτεινόμενο βίντεο παίζει αυτόμα
here for a quick overview http://stackoverflow.com/questions/29768219/grouped-barplot-in-r-with-error-bars of the site Help Center Detailed answers to http://rstatistics.tumblr.com/post/470327991/make-a-barplot-with-errorbars-now-this-is-a any questions you might have Meta Discuss the workings and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring developers or posting ads with us Stack error bar Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 6.2 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign up Grouped barplot in with error bars R with error bars up vote 4 down vote favorite 1 Dear Stackoverflow users, I would like to draw a grouped barplot with error bars. Here is the kind of figure I have been able to get up to now, and this is ok for what I need: And here is my script: #create dataframe Gene<-c("Gene1","Gene2","Gene1","Gene2") count1<-c(12,14,16,34) count2<-c(4,7,9,23) count3<-c(36,22,54,12) count4<-c(12,24,35,23) Species<-c("A","A","B","B") df<-data.frame(Gene,count1,count2,count3,count4,Species) df mean1<-mean(as.numeric(df[1,][c(2,3,4,5)])) mean2<-mean(as.numeric(df[2,][c(2,3,4,5)])) mean3<-mean(as.numeric(df[3,][c(2,3,4,5)])) mean4<-mean(as.numeric(df[4,][c(2,3,4,5)])) Gene1SpeciesA.stdev<-sd(as.numeric(df[1,][c(2,3,4,5)])) Gene2SpeciesA.stdev<-sd(as.numeric(df[2,][c(2,3,4,5)])) Gene1SpeciesB.stdev<-sd(as.numeric(df[3,][c(2,3,4,5)])) Gene2SpeciesB.stdev<-sd(as.numeric(df[4,][c(2,3,4,5)])) ToPlot<-c(mean1,mean2,mean3,mean4) #plot barplot plot<-matrix(ToPlot,2,2,byrow=TRUE) #with 2 being replaced by the number of genes! tplot<-t(plot) BarPlot <- barplot(tplot, beside=TRUE,ylab="count", names.arg=c("Gene1","Gene2"),col=c("blue","red")) #add legend legend("topright", legend = c("SpeciesA","SpeciesB"), fill = c("blue","red")) #add error bars ee<-matrix(c(Gene1SpeciesA.stdev,Gene2SpeciesA.stdev,Gene1SpeciesB.stdev,Gene2SpeciesB.stdev),2,2,byrow=TRUE)*1.96/sqrt(4) tee<-t(ee) error.bar(BarPlot,tplot,tee) The problem is that I need to do this for 50 genes, and 4 species, so my script is gonna get supe
a barplot with errorbars Now this is a tricky one: I wrote a script to plot a barplot with errorbars. I used the following script: #barplot where x is the independent on the x-axis, y is the #dependent on the y-axis and z is the independent given by #different colored bars anova.plot<-function(x, y, z, ylab="y", xlab="x", ylim=c(0, max(xx)+max(yy)), length=0.05){ #height of the bars xx<-tapply(y,list(z,x),mean) #standard deviation yy<-tapply(y,list(z,x),sd) #number of replicates zz<-tapply(y,list(z,x),length) #standard error er<-yy/sqrt(zz) #number of colors for bars w<-length(levels(z)) #simple barplot without the errorbars barx<-barplot(xx, col=c(1:w), beside=T, ylab=ylab, xlab=xlab, ylim=ylim,xpd=FALSE) #box around the plot box() #error bars arrows(barx,xx+er, barx, xx, angle=90, code=1, length=length) #legend (after making the plot, indicate where the legend has #to come with the mouse) legend(locator(1),c(levels(z)),fill=c(1:w),bty="n",cex=0.8) } If you have set your palette to: palette(c("grey25","grey50","grey75","white")) you get a plot like the one above if you use: anova.plot(x,y,z) (6 years ago) archive : rss : theme "2001" by 54mf : powered by Tumblr