Correction For Familywise Error
Contents |
may be challenged and removed. (June 2016) (Learn how and when to remove this template message) In statistics, family-wise family wise error rate error rate (FWER) is the probability of making one fwe correction or more false discoveries, or type I errors, among all the hypotheses when performing multiple family wise error bonferroni hypotheses tests. Contents 1 History 2 Background 2.1 Classification of multiple hypothesis tests 3 Definition 4 Controlling procedures 4.1 The Bonferroni procedure 4.2 The Šidák family wise error t tests procedure 4.3 Tukey's procedure 4.4 Holm's step-down procedure (1979) 4.5 Hochberg's step-up procedure 4.6 Dunnett's correction 4.7 Scheffé's method 4.8 Resampling procedures 5 Alternative approaches 6 References History[edit] Tukey coined the terms experimentwise error rate and "error rate per-experiment" to indicate error rates that the researcher could use as a
Family Wise Error Multiple Regression
control level in a multiple hypothesis experiment.[citation needed] Background[edit] Within the statistical framework, there are several definitions for the term "family": Hochberg & Tamhane defined "family" in 1987 as "any collection of inferences for which it is meaningful to take into account some combined measure of error".[1][pageneeded] According to Cox in 1982, a set of inferences should be regarded a family:[citation needed] To take into account the selection effect due to data dredging To ensure simultaneous correctness of a set of inferences as to guarantee a correct overall decision To summarize, a family could best be defined by the potential selective inference that is being faced: A family is the smallest set of items of inference in an analysis, interchangeable about their meaning for the goal of research, from which selection of results for action, presentation or highlighting could be made (Yoav Benjamini).[citation needed] Classification of multipl
c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", # "fdr", "none") Arguments p numeric vector of p-values (possibly with NAs). Any other R is coerced by as.numeric. method
Family Wise Error Anova
correction method. Can be abbreviated. n number of comparisons, must be at family wise error rate post hoc least length(p); only set this (to non-default) when you know what you are doing! Details The adjustment methods family wise error in statistics include the Bonferroni correction ("bonferroni") in which the p-values are multiplied by the number of comparisons. Less conservative corrections are also included by Holm (1979) ("holm"), Hochberg (1988) ("hochberg"), Hommel https://en.wikipedia.org/wiki/Family-wise_error_rate (1988) ("hommel"), Benjamini & Hochberg (1995) ("BH" or its alias "fdr"), and Benjamini & Yekutieli (2001) ("BY"), respectively. A pass-through option ("none") is also included. The set of methods are contained in the p.adjust.methods vector for the benefit of methods that need to have the method as an option and pass it on to p.adjust. The first four methods https://stat.ethz.ch/R-manual/R-patched/library/stats/html/p.adjust.html are designed to give strong control of the family-wise error rate. There seems no reason to use the unmodified Bonferroni correction because it is dominated by Holm's method, which is also valid under arbitrary assumptions. Hochberg's and Hommel's methods are valid when the hypothesis tests are independent or when they are non-negatively associated (Sarkar, 1998; Sarkar and Chang, 1997). Hommel's method is more powerful than Hochberg's, but the difference is usually small and the Hochberg p-values are faster to compute. The "BH" (aka "fdr") and "BY" method of Benjamini, Hochberg, and Yekutieli control the false discovery rate, the expected proportion of false discoveries amongst the rejected hypotheses. The false discovery rate is a less stringent condition than the family-wise error rate, so these methods are more powerful than the others. Note that you can set n larger than length(p) which means the unobserved p-values are assumed to be greater than all the observed p for "bonferroni" and "holm" methods and equal to 1 for the other methods. Value A numeric vector of corrected p-values (of the
Descriptive Statistics Hypothesis Testing General Properties of Distributions Distributions Normal Distribution Sampling Distributions Binomial and Related Distributions Student's t Distribution Chi-square and F Distributions Other Key Distributions Testing for http://www.real-statistics.com/one-way-analysis-of-variance-anova/experiment-wise-error-rate/ Normality and Symmetry ANOVA One-way ANOVA Factorial ANOVA ANOVA with Random or Nested Factors Design of Experiments ANOVA with Repeated Measures Analysis of Covariance (ANCOVA) Miscellaneous Correlation Reliability Non-parametric Tests Time Series Analysis Survival Analysis Handling Missing Data Regression Linear Regression Multiple Regression Logistic Regression Multinomial and Ordinal Logistic Regression Log-linear Regression Multivariate Descriptive Multivariate Statistics Multivariate Normal Distribution Hotelling’s T-square wise error MANOVA Repeated Measures Tests Box’s Test Factor Analysis Cluster Analysis Appendix Mathematical Notation Excel Capabilities Matrices and Iterative Procedures Linear Algebra and Advanced Matrix Topics Other Mathematical Topics Statistics Tables Bibliography Author Citation Blogs Tools Real Statistics Functions Multivariate Functions Time Series Analysis Functions Missing Data Functions Data Analysis Tools Contact Us Experiment-wise error rate We could have conducted the analysis family wise error for Example 1 of Basic Concepts for ANOVA by conducting multiple two sample tests. E.g. to decide whether or not to reject the following null hypothesis H0: μ1 = μ2 = μ3 We can use the following three separate null hypotheses: H0: μ1 = μ2 H0: μ2 = μ3 H0: μ1 = μ3 If any of these null hypotheses is rejected then the original null hypothesis is rejected. Note however that if you set α = .05 for each of the three sub-analyses then the overall alpha value is .14 since 1 – (1 – α)3 = 1 – (1 – .05)3 = 0.142525 (see Example 6 of Basic Probability Concepts). This means that the probability of rejecting the null hypothesis even when it is true (type I error) is 14.2525%. For k groups, you would need to run m = COMBIN(k, 2) such tests and so the resulting overall alpha would be 1 – (1 – α)m, a value which would get progressively higher as the number of samples increases. For example, if k = 6, then m = 15 and the probability of finding at least one significant t-test, purely by chance, even when t