Error Rate Estimation
& Bioassays Resources...DNA & RNABLAST (Basic Local Alignment Search Tool)BLAST (Stand-alone)E-UtilitiesGenBankGenBank: BankItGenBank: SequinGenBank: tbl2asnGenome WorkbenchInfluenza VirusNucleotide DatabasePopSetPrimer-BLASTProSplignReference Sequence (RefSeq)RefSeqGeneSequence Read Archive (SRA)SplignTrace ArchiveUniGeneAll DNA & RNA Resources...Data & SoftwareBLAST (Basic Local Alignment Search Tool)BLAST (Stand-alone)Cn3DConserved Domain Search Service (CD Search)E-UtilitiesGenBank: BankItGenBank: SequinGenBank: tbl2asnGenome ProtMapGenome WorkbenchPrimer-BLASTProSplignPubChem Structure SearchSNP Submission ToolSplignVector Alignment Search Tool (VAST)All Data & Software Resources...Domains & StructuresBioSystemsCn3DConserved Domain Database (CDD)Conserved Domain Search Service (CD Search)Structure (Molecular Modeling Database)Vector Alignment Search Tool (VAST)All Domains & Structures Resources...Genes & ExpressionBioSystemsDatabase of Genotypes and Phenotypes (dbGaP)E-UtilitiesGeneGene Expression Omnibus (GEO) Database Gene Expression Omnibus (GEO) DatasetsGene Expression Omnibus (GEO) ProfilesGenome WorkbenchHomoloGeneMap ViewerOnline Mendelian Inheritance in Man (OMIM)RefSeqGeneUniGeneAll Genes & Expression Resources...Genetics & MedicineBookshelfDatabase of Genotypes and Phenotypes (dbGaP)Genetic Testing RegistryInfluenza VirusMap ViewerOnline Mendelian Inheritance in Man (OMIM)PubMedPubMed Central (PMC)PubMed Clinical QueriesRefSeqGeneAll Genetics & Medicine Resources...Genomes & MapsDatabase of Genomic Structural Variation (dbVar)GenBank: tbl2asnGenomeGenome ProjectGenome ProtMapGenome WorkbenchInfluenza VirusMap ViewerNucleotide DatabasePopSetProSplignSequence Read Archive (SRA)SplignTrace ArchiveAll Genomes & Maps Resources...HomologyBLAST (Basic Local Alignment Search Tool)BLAST (Stand-alone)BLAST Link (BLink)Conserved Domain Database (CDD)Conserved Domain Search Service (CD
Login Help Contact Us About Access You are not currently logged in. Access your personal account or get JSTOR access through your library or other institution: login Log in to your personal account or through your institution. If You Use a Screen ReaderThis content is available through Read Online (Free) program, which relies on page scans. Since scans are not currently http://www.ncbi.nlm.nih.gov/pubmed/20816881 available to screen readers, please contact JSTOR User Support for access. We'll provide a PDF copy for your screen reader. Journal of Marketing Research Vol. 19, No. 1, Feb., 1982 Estimation of Error ... Estimation of Error Rates in Several-Population Discriminant Analysis Stephen C. Hora and James B. Wilcox Journal https://www.jstor.org/stable/3151530 of Marketing Research Vol. 19, No. 1 (Feb., 1982), pp. 57-61 Published by: American Marketing Association DOI: 10.2307/3151530 Stable URL: http://www.jstor.org/stable/3151530 Page Count: 5 Read Online (Free) Download ($24.00) Subscribe ($19.50) Cite this Item Cite This Item Copy Citation Export Citation Export to RefWorks Export a RIS file (For EndNote, ProCite, Reference Manager, Zotero…) Export a Text file (For BibTex) Note: Always review your references and make any necessary corrections before using. Pay attention to names, capitalization, and dates. × Close Overlay Journal Info Journal of Marketing Research Description: Journal of Marketing Research (JMR) concentrates on the subject of marketing research, from its philosophy, concepts, and theories to its methods, techniques, and applications. This quarterly, peer-reviewed journal is published for technically-oriented research analysts, educators, and statisticians. JMR addresses concepts, methods, and applications of marketing research that present new techniques, contribute to knowledge based on experimental or descriptive meth
Open Access Estimation of sequencing error rates in short readsXinVictoria Wang1, 2, NatalieBlades3, JieDing1, 2, RazvanSultana1, 4 and GiovanniParmigiani1, 2Email authorBMC Bioinformatics201213:185DOI: 10.1186/1471-2105-13-185© Wang et http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-185 al.; licensee BioMed Central Ltd.2012Received: 20December2011Accepted: 13July2012Published: 30July2012 Abstract Background Short-read data from next-generation sequencing technologies are now being generated across a range of research projects. The fidelity of this data can be affected by several factors and it is important to have simple and reliable approaches for monitoring it at the level of individual experiments. Results error rate We developed a fast, scalable and accurate approach to estimating error rates in short reads, which has the added advantage of not requiring a reference genome. We build on the fundamental observation that there is a linear relationship between the copy number for a given read and the number of erroneous reads that differ from the read of error rate estimation interest by one or two bases. The slope of this relationship can be transformed to give an estimate of the error rate, both by read and by position. We present simulation studies as well as analyses of real data sets illustrating the precision and accuracy of this method, and we show that it is more accurate than alternatives that count the difference between the sample of interest and a reference genome. We show how this methodology led to the detection of mutations in the genome of the PhiX strain used for calibration of Illumina data. The proposed method is implemented in an R package, which can be downloaded from http://bcb.dfci.harvard.edu/∼vwang/shadowRegression.html. Conclusions The proposed method can be used to monitor the quality of sequencing pipelines at the level of individual experiments without the use of reference genomes. Furthermore, having an estimate of the error rates gives one the opportunity to improve analyses and inferences in many applications of next-generation sequencing data. BackgroundThe rapid development of new DNA sequencing technologies is transformin
be down. Please try the request again. Your cache administrator is webmaster. Generated Fri, 14 Oct 2016 16:00:43 GMT by s_ac15 (squid/3.5.20)