Falcon 320 No Data Error
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No Data Received Err_empty_response
Post Is it ok to combine RR run and HO run data for downstream data analysis? weigrc how to fix no data received err_empty_response Illumina/Solexa 4 05-03-2015 05:30 PM FALCON assembler oakeley Pacific Biosciences 4 02-14-2014 10:30 AM Viral Fusion Seq Error with the test data akhattri Bioinformatics 3 01-06-2014 02:20 AM Cufflinks error
Unable To Load The Webpage Because The Server Sent No Data
message on test data Sherry Bioinformatics 12 07-23-2012 05:02 AM Stampy's test run lukas1848 Bioinformatics 6 04-29-2012 04:53 AM Thread Tools 07-26-2016, 10:33 PM #1 jw457 Junior Member Location: Australia Join Date: Jul 2016 Posts: 3 Falcon run error using test data I am a beginner of FALCON and try to learn how to use FALCON. no data received err_empty_response mac I try to follow the steps in "Setup: Complete example" (https://github.com/PacificBioscience...mplete-example) To do the test on my laptop Ubuntu 14.04 64 bit, I add one line job_type=local to the end of fc_run_ecoli.cfg. But when I ran the final command fc_run.py fc_run_ecoli.cfg I got some errors as below. It's difficult for me to figure out what the problem is. Could anyone help me out? Many thanks in advance The error message is pasted as below. ============================================================ $ fc_run.py fc_run_ecoli.cfg [INFO]Setup logging from file "None". [INFO]fc_run started with configuration fc_run_ecoli.cfg [WARNING]HPC.daligner option "-dal" has changed to "-B". Correcting this for you. [WARNING]HPC.daligner option "-dal" has changed to "-B". Correcting this for you. [INFO] No target specified, assuming "assembly" as target /home/jiwu2573/files/testing/pacbio/test9/FALCON-integrate/fc_env/lib/python2.7/site-packages/falcon_kit-0.7+git.85e41a6ab3bbeaece25f43e47c8f9a2cb9feb31a-py2.7-linux-x86_64.egg/falcon_kit/run_support.py:320: UserWarning: Unexpected keys in input config: set(['jobqueue']) warnings.warn("Unexpected keys in input config: %s" %repr(unused)) [INFO]# of tasks in complete graph: 1 [INFO]tick: 1, #updatedTasks: 0, sleep_time=0.000000 [INFO]tick: 2, #updatedTasks: 0, sleep_time=0.100000 [INFO]Running task from function task_make_fofn_abs_raw() [WARNING]Missing taskObj.generated_script_fn for task. Maybe we did not need it? Skipping and continuing. [INFO]Queued 'task:///home/jiwu2573/files/testing/pacbio/test9/FALCON-integrate/fc_env/lib/python2.7/site-packages/falcon_kit-0.7+git.85e41a6ab3bbeaece25f43e47c8f9a2cb9feb31a-py2.7-linux-x86_64.egg/falcon_kit/mains/run1.py/task_make_fofn_abs_raw' ... [INFO]Success ('done'). Joining 'task:///home/jiwu2573/files/
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No Data Received Err_empty_response Php
Fork 14 PacificBiosciences/FALCON-integrate Code Issues 6 Pull requests 0
No Data Received Android
Projects 0 Wiki Pulse Graphs New issue test fail #75 Closed qw1mb0 opened this Issue no data received all browsers Jul 21, 2016 · 7 comments Projects None yet Labels None yet Milestone No milestone Assignees No one assigned 3 participants http://seqanswers.com/forums/showthread.php?t=70507 qw1mb0 commented Jul 21, 2016 • edited Hello. How can i know because of what the error occurs? I get an error on run 'make test': > make -C ./FALCON-make/ test > make[1]: Вход в каталог /usr/local/src/FALCON-integrate/FALCON-make' > make -C /usr/local/src/FALCON-integrate/FALCON-examples test > make[2]: Вход в каталог /usr/local/src/FALCON-integrate/FALCON-examples' > https://github.com/PacificBiosciences/FALCON-integrate/issues/75 python -c 'import pypeflow.common; print pypeflow.common' >
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