Error Bars Graphs R
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here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring developers or posting ads error bars line graphs with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack error bars on graphs in excel Overflow Community Stack Overflow is a community of 4.7 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign r plot error bars scatter plot up Add error bars to show standard deviation on a plot in R up vote 23 down vote favorite 10 For each X-value I calculated the average Y-value and the standard deviation (sd) of each Y-value x = 1:5 y = c(1.1,
Error Bars Histogram
1.5, 2.9, 3.8, 5.2) sd = c(0.1, 0.3, 0.2, 0.2, 0.4) plot (x, y) How can I use the standard deviation to add error bars to each datapoint of my plot? r plot statistics standard-deviation share|improve this question edited Oct 16 '14 at 3:43 Craig Finch 11417 asked Feb 25 '13 at 8:59 John Garreth 4572413 also see plotrix::plotCI –Ben Bolker Feb 25 '13 at 15:13 add a comment| 5 Answers 5 active oldest votes up vote 16 down vote accepted y error bars A Problem with csgillespie solution appears, when You have an logarithmic X axis. The you will have a different length of the small bars on the right an the left side (the epsilon follows the x-values). You should better use the errbar function from the Hmisc package: d = data.frame( x = c(1:5) , y = c(1.1, 1.5, 2.9, 3.8, 5.2) , sd = c(0.2, 0.3, 0.2, 0.0, 0.4) ) ##install.packages("Hmisc", dependencies=T) library("Hmisc") # add error bars (without adjusting yrange) plot(d$x, d$y, type="n") with ( data = d , expr = errbar(x, y, y+sd, y-sd, add=T, pch=1, cap=.1) ) # new plot (adjusts Yrange automatically) with ( data = d , expr = errbar(x, y, y+sd, y-sd, add=F, pch=1, cap=.015, log="x") ) share|improve this answer answered Sep 6 '13 at 14:21 R_User 3,18984581 add a comment| up vote 19 down vote A solution with ggplot2 : qplot(x,y)+geom_errorbar(aes(x=x, ymin=y-sd, ymax=y+sd), width=0.25) share|improve this answer answered Feb 25 '13 at 9:06 juba 24.1k56081 add a comment| up vote 18 down vote You can use segments to add the bars in base graphics. Here epsilon controls the line across the top and bottom of the line. plot (x, y, ylim=c(0, 6)) epsilon = 0.02 for(i in 1:5) { up = y[i] + sd[i] low = y[i] - sd[i] segments(x[i],low , x[i], up) segments(x[i]-epsilon, up , x[i]+epsilon, up) segments(x[i]-epsilon, low , x[i]+epsilon, low) } As @thelatemail points out, I should really have used vectorised function calls: segments(x, y-sd,x, y+sd) epsilon = 0.02 segments(x-ep
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Error.bar Function R
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Errbar R
4.7 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign up Scatter plot with error bars up vote 21 down vote favorite 11 How can I generate the following http://stackoverflow.com/questions/15063287/add-error-bars-to-show-standard-deviation-on-a-plot-in-r plot in R? Points, shown in the plot are the averages, and their ranges correspond to minimal and maximal values. I have data in two files (below is an example). x y 1 0.8773 1 0.8722 1 0.8816 1 0.8834 1 0.8759 1 0.8890 1 0.8727 2 0.9047 2 0.9062 2 0.8998 2 0.9044 2 0.8960 .. ... r plot share|improve this question edited Oct 23 '12 at 15:10 Roland 73.2k463102 asked http://stackoverflow.com/questions/13032777/scatter-plot-with-error-bars Oct 23 '12 at 14:29 sherlock85 1521313 Since you clearly don't want a boxplot, I changed the title of your question in order to reflect what you really want. –Roland Oct 23 '12 at 15:11 1 also plotrix::plotCI, gplots::plotCI, library("sos"); findFn("{error bar}") –Ben Bolker Oct 23 '12 at 17:29 add a comment| 5 Answers 5 active oldest votes up vote 52 down vote accepted First of all: it is very unfortunate and surprising that R cannot draw error bars "out of the box". Here is my favourite workaround, the advantage is that you do not need any extra packages. The trick is to draw arrows (!) but with little horizontal bars instead of arrowheads (!!!). This not-so-straightforward idea comes from the R Wiki Tips and is reproduced here as a worked-out example. Let's assume you have a vector of "average values" avg and another vector of "standard deviations" sdev, they are of the same length n. Let's make the abscissa just the number of these "measurements", so x <- 1:n. Using these, here come the plotting commands: plot(x, avg, ylim=range(c(avg-sdev, avg+sdev)), pch=19, xlab="Measurements", ylab="Mean +/- SD", main="Scatter plot with std.dev error bars" ) # hack: we draw arrows but with very special "arrowheads" arrows(x, avg-sdev, x, avg+sdev, length=0.05, angle=90, code=3) The res
by over 573 bloggers. There are many ways to follow us - By e-mail: On Facebook: If you are an R blogger yourself you are invited to add https://www.r-bloggers.com/bar-plot-with-error-bars-in-r/ your own R content feed to this site (Non-English R bloggers should add themselves- here) Jobs for R-usersFinance Manager @ Seattle, U.S.Data Scientist – AnalyticsTransportation Market Research Analyst @ Arlington, U.S.Data AnalystData Scientist for Madlan @ Tel Aviv, Israel Popular Searches web scraping heatmap twitter maps time series boxplot animation shiny how to import image file to R hadoop Ggplot2 trading latex finance eclipse excel quantmod sql googlevis PCA knitr error bars rstudio ggplot market research rattle regression coplot map tutorial rcmdr Recent Posts RcppAnnoy 0.0.8 R code to accompany Real-World Machine Learning (Chapter 2) R Course Finder update ggplot2 2.2.0 coming soon! All the R Ladies One Way Analysis of Variance Exercises GoodReads: Machine Learning (Part 3) Danger, Caution H2O steam is very hot!! R+H2O for marketing campaign modeling Watch: Highlights of the Microsoft Data Science Summit A simple workflow for deep error bars graphs learning gcbd 0.2.6 RcppCNPy 0.2.6 Using R to detect fraud at 1 million transactions per second Introducing the eRum 2016 sponsors Other sites SAS blogs Jobs for R-users Bar plot with error bars in R October 20, 2013By heuristicandrew (This article was first published on Heuristic Andrew » r-project, and kindly contributed to R-bloggers) Here's a simple way to make a bar plot with error bars three ways: standard deviation, standard error of the mean, and a 95% confidence interval. The key step is to precalculate the statistics for ggplot2. Continue reading → Related To leave a comment for the author, please follow the link and comment on their blog: Heuristic Andrew » r-project. R-bloggers.com offers daily e-mail updates about R news and tutorials on topics such as: Data science, Big Data, R jobs, visualization (ggplot2, Boxplots, maps, animation), programming (RStudio, Sweave, LaTeX, SQL, Eclipse, git, hadoop, Web Scraping) statistics (regression, PCA, time series, trading) and more... If you got this far, why not subscribe for updates from the site? Choose your flavor: e-mail, twitter, RSS, or facebook... Comments are closed. Recent popular posts ggplot2 2.2.0 coming soon! R code to accompany Real-World Machine Learning (Chapter 2) GoodReads: Machine Learning (Part 3) One Way Analysis of Variance Exercises Most vi