Error Stdio.h No Such File Or Directory Matlab
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them; it only takes a minute: Sign up Standard C libraries not found when compiling mex files in Matlab up vote 4 down vote favorite Update: I installed XCode and changed SDKROOT in mexopts.sh to reflect the actual path as described here, but I still get this error when I include mex.h: In file included from /Applications/MATLAB_R2012b.app/extern/include/matrix.h:294, from /Applications/MATLAB_R2012b.app/extern/include/mex.h:58, from test.c:2: /Applications/MATLAB_R2012b.app/extern/include/tmwtypes.h:61:21: error: float.h: No such file or directory mex: compile of ' "test.c"' failed. I'm trying to compile a trivial C file for use in Matlab through mex, but it seems to never find default libraries that I know are installed. For instance, trying to compile the following: #include
here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring developers or posting ads with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 4.7 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign up MATLAB MEX can't find standard library with XCode 4.3 (Mac) up vote 5 down vote favorite 1 I am getting started with using MEX files http://stackoverflow.com/questions/13385978/standard-c-libraries-not-found-when-compiling-mex-files-in-matlab for MATLAB (R2012a) compiled from C code (using XCode 4.3) on my Mac (running OSX 10.7.3, Lion). I have already installed the MATLAB provided XCode patch which configures MATLAB to use the new llvm-gcc compiler under XCode 4.2+, but I am still getting the following error attempting to compile the example file using mex timestwo.c: /Applications/MATLAB_R2012a.app/extern/include/matrix.h:852:20: error: stdlib.h: No such file or directory In file included from timestwo.c:1: /Applications/MATLAB_R2012a.app/extern/include/mex.h:161:19: error: stdio.h: No such file or directory http://stackoverflow.com/questions/9845762/matlab-mex-cant-find-standard-library-with-xcode-4-3-mac The compilation then breaks mex: compile of ' "timestwo.c"' failed. Error using mex (line 206) Unable to complete successfully. Clearly, the compiler can't find the standard library header directory, but what do I need to change to successfully compile? xcode matlab mex xcode4.3 share|improve this question edited Dec 21 '12 at 10:54 Tim 634615 asked Mar 23 '12 at 19:59 Bryan P 1,1691029 add a comment| 3 Answers 3 active oldest votes up vote 9 down vote accepted Ah, found it! The MATLAB provided template uses /Developer/... for the SDK location, but this changed under XCode4.3 to live under the XCode.app. To fix things, I had to edit my ~/.matlab/R2012a/mexopts.sh file to set the SDKROOT directory to the new location. To do this, search for SDKROOT in the mexopts.sh file and change it to read: SDKROOT='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk/' Note, I chose the 10.7 sdk b/c I am on Lion. Use 10.6 if you are on Snow Leopard share|improve this answer answered Mar 24 '12 at 13:36 Bryan P 1,1691029 Thanks for solving your problem and posting your answer. It worked for me! –Tim Dec 21 '12 at 10:54 @Tim: regarding your edit in leif's answer. If you think that the answer can be improved, edit it, but add your code below so it's obvious which answer/code was accepted and what is the sug
the ecos mex http://www.alecjacobson.com/weblog/?p=3903 files I ran into the following errors: In file included from /opt/local/lib/gcc47/gcc/x86_64-apple-darwin13/4.7.3/include-fixed/syslimits.h:7:0, from /opt/local/lib/gcc47/gcc/x86_64-apple-darwin13/4.7.3/include-fixed/limits.h:34, from ../external/SuiteSparse_config/SuiteSparse_config.h:45, from ../external/ldl/include/ldl.h:11, from ../external/ldl/src/ldl.c:157: /opt/local/lib/gcc47/gcc/x86_64-apple-darwin13/4.7.3/include-fixed/limits.h:169:61: error: https://github.com/BLLIP/bllip-parser/issues/19 no include path in which to search for limits.h In file included from ../external/ldl/include/ldl.h:11:0, from ../external/ldl/src/ldl.c:157: ../external/SuiteSparse_config/SuiteSparse_config.h:46:20: fatal error: stdlib.h: No no such such file or directory compilation terminated. mex: compile of ' "../external/ldl/src/ldl.c"' failed. Turns out this has nothing to do with ecos, rather I had upgraded my OS since installing matlab. I need to replace 10.7 with 10.9 in my /Applications/MATLAB_R2013b.app/bin/mexopts.sh file. Then no such file everything compiled fine. The offending flags were: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk/ -mmacosx-version-min=10.7 And the correct versions were: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/ -mmacosx-version-min=10.9 Tags: c#, ecos, gcc, limits, mac os x, matlab, mex, stdlib This entry was posted on Friday, April 18th, 2014 at 5:26 pm and is filed under code. You can follow any responses to this entry through the RSS 2.0 feed. You can leave a response, or trackback from your own site. One Response to "Matlab's mex can't find std headers" Keith says: July 25, 2015 at 5:19 am Thank you, this helped me quite a bit. Leave a Reply Click here to cancel reply. Name (required) Mail (will not be published) (required) Website Alec's Web Log is proudly powered by WordPress Entries (RSS) and Comments (RSS). Array
Sign in Pricing Blog Support Search GitHub This repository Watch 12 Star 113 Fork 38 BLLIP/bllip-parser forked from dmcc/bllip-parser Code Issues 14 Pull requests 2 Projects 0 Pulse Graphs New issue Compilation fails under OS X 10.9 (Mavericks) #19 Open L3viathan opened this Issue Jan 26, 2014 · 54 comments Projects None yet Labels compile help-wanted reranker Milestone No milestone Assignees No one assigned 10 participants L3viathan commented Jan 26, 2014 While I have had the same problem that is described here, the suggested steps only brought me so far. The compiler doesn't find , which, I'm sure, is because of changes by Apple in 10.9. Here's the relevant part of the output: g++ -MMD -O3 -Wall -ffast-math -finline-functions -fomit-frame-pointer -fno-strict-aliasing -fPIC Bchart.o BchartSm.o Bst.o FBinaryArray.o CntxArray.o ChartBase.o ClassRule.o ECArgs.o Edge.o EdgeHeap.o ExtPos.o Feat.o Feature.o FeatureTree.o Field.o FullHist.o GotIter.o InputTree.o Item.o Link.o Params.o ParseStats.o SentRep.o ScoreTree.o Term.o TimeIt.o UnitRules.o ValHeap.o edgeSubFns.o ewDciTokStrm.o extraMain.o fhSubFns.o headFinder.o headFinderCh.o utils.o MeChart.o parseIt.o -o parseIt -D_REENTRANT -D_XOPEN_SOURCE=600 -lpthread /Applications/Xcode.app/Contents/Developer/usr/bin/make -C second-stage/programs/features best-parses g++ -MMD -O3 -Wall -ffast-math -finline-functions -fomit-frame-pointer -fno-strict-aliasing -fPIC -Wno-deprecated -c -o best-parses.o best-parses.cc In file included from best-parses.cc:50: ./popen.h:25:10: fatal error: 'ext/stdio_filebuf.h' file not found #include