Error In Command Sumt
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you by: hoehna, huelsenbeck, maxkth, paulvdm, and 2 others Summary Files Reviews Support Tickets ▾ Bugs Patches Features Mailing Lists Discussion News Code Create Ticket View Stats Group v3.1.x v3.2.x v4.0.x Searches Closed Tickets Open Tickets Help Formatting Help #1639 Problems with sumt command Milestone: v3.2.x Status: closed Owner: nobody Labels: None Priority: 1 Updated: 2016-07-15 Created: 2016-01-20 Creator: Joxerra Aihartza Private: No When I used the sumt command I got the following error https://sourceforge.net/p/mrbayes/mailman/message/28536141/ message: MrBayes > sumt Summarizing trees in files "FilostomVS.nex.run1.t" and "FilostomVS.nex.run2.t" Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees Writing statistics to files FilostomVS.nex.
between multiple versions of your content, and revert back to older versions. Submitted by mats on Wed, http://www.matstopel.se/node/49/revisions/397/view 09/12/2012 - 20:42 This page could have been a Q&A (Questions & Answers), but instead I have decided to call it an E&S - Error messages and solutions! Program: zorro Error message: mats@Slartibartfasts:~/project/tic22/master$ zorro Tic22_outgroup.4.linsi.fst > out.txt error: Cannot create tree from alignment Check FastTree installation exiting... Solution: My installation works with the example file distributed error in with the program, so I suppose the problem is the fasta file I'm trying to analyse. A typical fasta header in the file looks something like ">Linum_usitatissimum gnl|BL_ORD_ID|39140 10009759|PACid 23178320". Check that all fasta headers are unique. Remove the characters ":,()" from the sequence names. Remove spaces from the sequence names. Program: MrBayes v.3.2 Error message error in command #1: ... Number of chains on processor 6 = 1 Number of chains on processor 7 = 1 Number of chains on processor 8 = 1 Number of taxa = 105 Number of characters = 2002 Compressing data matrix for division 1 Division 1 has 282 unique site patterns The MCMC sampler will use the following moves: With prob. Chain will use move 19.23 % eSS(Tau,V) 19.23 % eTBR(Tau,V) 38.46 % pSPR(Tau,V) 19.23 % Multiplier(V) 3.85 % Uniform(Aamodel) Creating parsimony (bitset) matrix for division 1 Initializing conditional likelihoods for terminals Initializing conditional likelihoods for internal nodes Allocating space for parsimony sets Initial log likelihoods and log prior probs for run 1: Chain 1 -- -56327.889100 -- -176.482300 There are 7 more chains on other processor(s) Chain results: 1 -- (-56273.020) [...7 remote chains...] [compute-0-0:13441] *** Process received signal *** [compute-0-0:13441] Signal: Segmentation fault (11) [compute-0-0:13441] Signal code: (128) [compute-0-0:13441] Failing at address: (nil) [compute-0-0:13441] [ 0] /lib64/libpthread.so.0 [0x3fa1c0e7c0] [compute-0-0:13441] [ 1] /lib64/libc.so.6(vsnprintf+0x84) [0x3fa1469874] [compute-0-0:13441] [ 2] /usr/
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