Heat Map Error In Plot.new Figure Margins Too Large
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Error In Plot.new() Figure Margins Too Large Rstudio
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Increasing The Size Of The Plots Pane.
programmers, just like you, helping each other. Join them; it only takes a minute: Sign up Error in plot.new() : figure margins too large, Scatter plot up vote 21 down vote favorite 11 I've looked in different increasing the size of the plots pane rstudio questions for a solution and I've tried what was suggested but I have not found a solution to make it work. Everytime I want to run this code it always says: Error in plot.new() : figure margins too large and I don't know how to fix it. Here is my code: par(mfcol=c(5,3)) hist(RtBio, main="Histograma de Bio Pappel") boxplot(RtBio, main="Diagrama de Caja de Bio Pappel") stem(RtBio) plot(RtBio, main="Gráfica de Dispersión") hist(RtAlsea, main="Histograma de Alsea") error in plot.new() : plot region too large boxplot(Alsea, main="Diagrama de caja de Alsea") stem(RtAlsea) plot(RtTelev, main="Gráfica de distribución de Alsea") hist(RtTelev, main="Histograma de Televisa") boxplot(telev, main="Diagrama de Caja de Televisa") stem(Telev) plot(Telev, main="Gráfica de dispersión de Televisa") hist(RtWalmex, main="Histograma de Walmex") boxplot(RtWalmex, main="Diagrama de caja de Walmex") stem(RtWalmex) plot(RtWalmex, main="Gráfica de dispersión de Walmex") hist(RtIca, main="Histograma de Ica") boxplot(RtIca, main="Gráfica de caja de Ica") stem(RtIca) plot(RtIca, main="Gráfica de dispersión de Ica") What can I do? r plot figure margins share|improve this question edited May 2 at 18:43 lmo 11.6k81739 asked Apr 14 '14 at 2:14 user3530361 111114 1 the related questions to the right is maxed out with the same question. you didn't look very hard –rawr Apr 14 '14 at 2:23 possible duplicate of Error in plot.new() : figure margins too large in R –Calimo Feb 6 '15 at 8:40 1 Margins appear to be too large for your image. This can happen if you have a small plot window. In any case, your description is insufficient to diagnose the problem. We could use a reproducible example or screenshot of your R session with the plot window. –Roman Luštrik Feb 6 '15 at 9:49 add a comment| 4 Answers 4 active oldest votes up vote 42 down vote Every time you are creating plots you might get this error - "Erro
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Par(mar = Rep(2, 4))
Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 4.7 million programmers, just like http://stackoverflow.com/questions/23050928/error-in-plot-new-figure-margins-too-large-scatter-plot you, helping each other. Join them; it only takes a minute: Sign up How to add more margin to a heatmap.2 plot with the png device? up vote 6 down vote favorite 3 I have the following example data: sel = structure(c(1.29955, 2.52295, 1.11021, 2.52008, 8.20255, 8.50118, 5.82189, 5.8108, 1.55928, 8.2552, 5.25119, 5.55055, 1.22525, 3.152, 3.9299, 5.50921, http://stackoverflow.com/questions/21427863/how-to-add-more-margin-to-a-heatmap-2-plot-with-the-png-device 5.25591, 5.11218, 1.55951, 2.5525, 9.2358, 2.0928, 5.2538, 2.5539, 8.52592, 2.59521, 5.55858, 5.92955, 2.22089, 1.52105), .Dim = c(10L, 3L), .Dimnames = list(c("a", "b", "c", "d", "e", "f", "g", "h", "i", "j"), c("Label.1", "Label.2", "Label.3"))) And I use this code to plot the figure: col = c("#FF0000", "#FF0000", "#FF0000") par(mar=c(7,4,4,2)+0.1) png(filename='test.png', width=800, height=750) heatmap.2(sel, col=redgreen(75), scale="row", ColSideColors=col, key=TRUE, symkey=FALSE, density.info="none", trace="none") graphics.off() Which gives me this heatmap: As you can see, the x-axis labels are cut off. I tried to make the margins larger with par(mar=c(7,4,4,2)+0.1) (from the default par(mar=c(5,4,4,2)+0.1)) but that does not change how the label is cut off. I tried changing the lmat, lhei and lwid options in heatmap.2, so that it is: heatmap.2(zebrafishSel, col=redgreen(75), scale="row", ColSideColors=zebracolors, key=TRUE, symkey=FALSE, density.info="none", trace="none", lmat=rbind(c(2),c(3),c(1),c(4)), lhei=c(1,1,9,0), lwid=c(1)) but this gives the error Error in plot.new() : outer margins too large (figure region too small) How can I enlarge the margin with heatmap.2 and the png device? r png heatmap margins share|improve this question asked Jan 29 '14 at 10:11 Nie
Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Error in plot.new() : figure margins too large Hello http://r.789695.n4.nabble.com/Error-in-plot-new-figure-margins-too-large-td4635651.html All, I am running the following code in RStudio, and I keep https://support.bioconductor.org/p/64658/ on getting an error message that says: "Error in plot.new() : figure margins too large" Is there something that I am doing wrong? # Import Data nba <- read.csv("http://datasets.flowingdata.com/ppg2008.csv", sep=",") nba #Sort Data (sorting by Points, but could be sorting by any other variable) nba <- nba[order(nba$PTS),] #Prepare Data: error in makes rows by player name instead of Row Number row.names(nba) <- nba$Name #Prepare Data: don't need first column anymore, so we get rid of it nba <- nba[,2:20] #Prepe Data: change data from a data frame to a data matrix nba_matrix <- data.matrix(nba) #Create Heat Map nba_heatmap <- heatmap(nba_matrix, Rowv=NA, Colv=NA, col = cm.colors(256), scale="column", margins=c(5,10)) Karly Harrod LBNL Summer Intern [hidden error in plot.new email] Lawrence Berkeley National Laboratory [[alternative HTML version deleted]] ______________________________________________ [hidden email] mailing list https://stat.ethz.ch/mailman/listinfo/r-helpPLEASE do read the posting guide http://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code. John Kane Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: Error in plot.new() : figure margins too large Your code works okay in a plan R terminal. It may be an Rstudio problem or perhaps you already have a graphics device open and are trying to draw into it? John Kane Kingston ON Canada > -----Original Message----- > From: [hidden email] > Sent: Fri, 6 Jul 2012 10:39:41 -0700 > To: [hidden email] > Subject: [R] Error in plot.new() : figure margins too large > > Hello All, > > I am running the following code in RStudio, and I keep on getting an > error message that says: "Error in plot.new() : figure margins too > large" > Is there something that I am doing wrong? > > > # Import Data > nba <- read.csv("http://datasets.flowingdata.com/ppg2008.csv", sep=",") > nba > >
graphs in one R Graphics window 0 20 months ago by AJC • 0 United States AJC • 0 wrote: Hello, I'm currently using flowPeaks for my 9-color flow cytometry data. Because I want to look at all the possible dot diagrams with 9 fluorechromes, I get 9x8/2 = 36 graphs. > par(mfrow=c(6,6)) > plot(fp,idx=c(1,2,3,4,5,6,7,8,9)) Error in plot.new() : figure margins too larg I tried par(mfrow=c(5,5)). The graphs get printed without errors but my first 25 graphs are gone as the R graph window refreshes and shows only 26th to 36th graphs. Is there a way to break the margin limit? I want to print all graphs in one pdf eventually. Any suggestions would be greatly appreciated. Thank you, A.J. Choi University of Maryland - College Park USA plot flowpeaks ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified 20 months ago by James W. MacDonald ♦ 41k • written 20 months ago by AJC • 0 0 20 months ago by James W. MacDonald ♦ 41k United States James W. MacDonald ♦ 41k wrote: You can usually get around this by making either your plotting window (or preferably, your pdf document) large enough to fit all the plots. > par(mfrow=c(6,6)) > for(i in 1:36) plot(1:10) Error in plot.new() : figure margins too large > x11(width = 10, height = 10) > par(mfrow=c(6,6)) > for(i in 1:36) plot(1:10) > For pdf: > pdf("tmp.pdf") > par(mfrow=c(6,6)) > for(i in 1:36) plot(1:10) Error in plot.new() : figure margins too large > dev.off() X11cairo 2 > pdf("tmp.pdf", 10,10) > for(i in 1:36) plot(1:10) > dev.off() X11cairo 2 ADD COMMENT • link written 20 months ago by James W. MacDonald ♦ 41k Please log in to add an answer. Similar posts • Search » maDiagnPlots1 problem Would someone know what I need to change to get rid of the following error: > maDiagnPlots1(s... Problems with the size of the plots obtained with AffyPLM Dear BioC users, I am assessing the quality of 20 Affymetrix arrayx of the type HGU-133-Plus... creating an MA plot with two single channel agilent arrays Hi, Gordon! Related to your last message of this thread, I have a question about MA-plot the me... bug info Hi, We are havin