R Help Error In Plot.new Figure Margins Too Large
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Increasing The Size Of The Plots Pane R
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Error In Plot.new() : Plot Region Too Large
but I've made numerous correlation plots with smaller data sets. However, when I try to plot a large dataset (2gb+), I can produce the plot just fine, but the legend doesn't show up. Any advice? or alternatives? > library(gplots) > r.cor <- cor(r) > layout(matrix(c(1,1,1,1,1,1,1,1,2,2), 5, 2, byrow = TRUE)) > par(oma=c(5,7,1,1)) > cx <- rev(colorpanel(25,"yellow","black","blue")) > leg <- seq(min(r.cor,na.rm=T),max(r.cor,na.rm=T),length=10) > image(r.cor,main="Correlation plot Normal/Tumor data",axes=F,col=cx) > axis(1, at=seq(0,1,length=ncol(r.cor)), labels=dimnames(r.cor)[[2]], + cex.axis=0.9,las=2) > axis(2,at=seq(0,1,length=ncol(r.cor)), labels=dimnames(r.cor)[[2]], + cex.axis=0.9,las=2) > image(as.matrix(leg),col=cx,axes=T) Error in plot.new() : figure margins too large > tmp <- round(leg,2) > axis(1,at=seq(0,1,length=length(leg)), labels=tmp,cex.axis=1) r plot share|improve this question edited Oct 7 '12 at 10:03 Gavin Simpson 105k13209304 asked Oct 7 '12 at 4:37 Steve Hwang 4091611 1 You should provide us with a reproducible example demonstrating ills you're having. stackoverflow.com/questions/12765668/… –Roman Luštrik Oct 7 '12 at 8:34 add a comment| 11 Answers 11 active
missing (legends, lines, etc.). This is generally due to the plot size or dimensions not being able to properly allocate space for the graphic components. For example, try error in par(op) : invalid value specified for graphical parameter "pin" the following plot: > plot(mtcars) Depending on your screen size and plotting region, par(mar = rep(2, 4)) this plot may look normal or extremely squished. By changing the size of the plotting region, more detail can
Display List Redraw Incomplete
be hidden or exposed such as labels, text, and points. Using the default R interface (RGui, R.app, or terminal R), graphics are placed in an overlapping window with a relatively large plotting http://stackoverflow.com/questions/12766166/error-in-plot-new-figure-margins-too-large-in-r region. Working with graphics in RStudio Instead of an overlapping window, graphics created in RStudio display inside the Plots pane. This is a dedicated region for plots inside the IDE. The width and height of this pane is determined by your current layout. To customize the size of this region, adjust the horizontal and vertical dividers between panes. R will automatically size your https://support.rstudio.com/hc/en-us/articles/200488548-Problem-with-Plots-or-Graphics-Device graphic to fit inside this region. Problems while Plotting Occasionally, distortions or even errors result when plotting: 1) "Error in plot.new() : figure margins too large" This error indicates that the margins of the particular plot are very large while the region allocated for the plot is too small. You can solve this problem by increasing the size of the plots pane. 2) Graphic with missing or distorted components When legends, lines, text, or points are missing or "incorrectly" placed, this is often the result of R condensing the plot to fit the region. You can generally solve this by increasing or decreasing the plotting region. 3) Reset your graphics device Resetting your graphics device will remove any leftover options or settings from previous plots. These might be causing undesired behavior or errors with your current plotting environment. See ?par and ?options for more details. For example: > plot(cars) > par(mfrow=c(2,2)) > plot(cars) To fix this behavior, sometimes it is best to reset your graphics device and then try your plot again. Subsequent plots will use the default graphics settings. To reset your graphics device, call the following c
in my dataset. I used -> par(mfrow=c(4,2))hist(data$season) but got an error saying Error error in in plot.new() : figure margins too large How can I get rid of this error? Thanks. Aditya_Sharma 2015-06-25 05:53:01 UTC #2 @pravin The problem is that you have error in plot.new a small region which is not sufficiently large enough to contain the default margins. Put this code par(mar = rep(2, 4)) after par(mfrow=c(4,2)) and then try. Hope it helps! dhamraj 2016-06-08 08:53:34 UTC #3 write this in r console:par('mar')it will give you current dimensions like this:5.1,4.1,2.1,3.1 now update this according to your convenience like:par(mar=c(1,1,1,1)then use plot.Hope it helps. Home Categories FAQ/Guidelines Terms of Service Privacy Policy Powered by Discourse, best viewed with JavaScript enabled Home Blog Jobs DataHack Trainings Learning Paths Forget Password j
1 min to run. data(Gamma) DR.FUSION.CI.CONTOUR(Gamma) ## [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] ## [1,] 96 96 96 96 96 86 86 84 63 55 39 ## [2,] 96 96 96 96 96 86 86 84 63 55 39 ## [3,] 96 96 96 96 96 86 86 84 63 55 39 ## [4,] 96 96 96 96 96 86 86 84 63 55 39 ## [5,] 95 95 95 95 95 85 85 83 62 54 38 ## [6,] 91 91 91 91 91 81 81 79 58 50 34 ## [7,] 89 89 89 89 89 79 79 77 56 48 32 ## [8,] 88 88 88 88 88 78 78 76 55 47 31 ## [9,] 88 88 88 88 88 78 78 76 55 47 31 ## [10,] 88 88 88 88 88 78 78 76 55 47 31 ## [11,] 88 88 88 88 88 78 78 76 55 47 31 DR.FUSION.CI.PLOT(Gamma) ## SP AC HB ## Mean 0.038 0.076 0.057 ## Width 0.035 0.138 0.097 ## Coverage 31.000 96.000 95.000 sudo R CMD REMOVE -l ~/Rlib/ DensityRatio sudo R CMD INSTALL -l ~/Rlib/ DensityRatio How to fix Error in plot.new(): figure margins too large par(mar=rep(1, 4)) library(ggplot2) library(lattice) load("~/Dropbox/workspace/July_11/S_TGCT.rda") x11(width = 7, height = 3.5) ggplot(data = S_TGCT) + geom_dotplot(aes(y = Weight, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.95, stackdir = "center") ggplot(data = S_TGCT) + geom_dotplot(aes(y = Height, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.4, stackdir = "center") ggplot(data = S_TGCT) + geom_dotplot(aes(y = Age, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.38, stackdir = "center") pdf("~/Dropbox/workspace/TGCT/beewarm.pdf", height = 3.5, width = 7) par(mfrow = c(3, 1)) ggplot(data = S_TGCT) + geom_dotplot(aes(y = Weight, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.95, stackdir = "center") ggplot(data = S_TGCT) + geom_dotplot(aes(y = Height, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.4, stackdir = "center") ggplot(data = S_TGCT) + geom_dotplot(aes(y = Age, x = CCTL, fill = CCTL), binaxis = "y", binwidth = 0.38, stackdir = "center") dev.off() ## pdf ## 2 xyplot(Weight + Height ~ Age | CCTL, data = S_TGCT) attach(S_TGCT) xyplot(Weight ~ Height | factor(Age), groups = CCTL)