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(SPP)User Groups All groupsLocal User GroupsEvent CalendarCustomer ProgramsBeta ProgramsSupport CommunityIdeas and RFEsAdvocate HubOne BMC Beta Process (BMC)Customer Experience (BMC)Help Communities TipsCommunities https://community.hpe.com/t5/General/HPUX-Error-239-Connection-refused/td-p/5127855 YouTubeBMC Social Central (BMC Only)Search the BMC CommunitiesSearch the BMC CommunitiesCancelError: You don't have JavaScript enabled. This tool uses JavaScript and much of it will not work correctly without it enabled. Please turn JavaScript back on and reload this page. Please enter a https://communities.bmc.com/thread/38342?start=0&tstart=0 title. You can not post a blank message. Please type your message and try again. More discussions in Server Automation All PlacesProductsBladeLogicServer Automation 1 Reply Latest reply on Mar 26, 2009 5:22 PM by Bill Robinson errno:239 connection refused - HPUX ftp download Todd McDaniel Mar 26, 2009 4:53 PM okay, i am trying to figure out why my patch download is failing for hpux.I setup my swa.conf file to go for the ftp site directly with no authentication, but the download keeps failing. the url works fine in my browser.SWA.CONF============================================catalog_source=http://ftp.itrc.hp.com/wpsl/bin/doc.pl/screen=wpslDownloadPatch/swa_catalog.xml.gz?PatchName=/export/patches/swa_catalog.xml.gzcrl_check=false============================================How can i test it from the commandline on my SWA server? Our appserver env is on linux, so I must have a separate hpux SWA server to handle the patch analysis and download portio
use with jump hostsLog In ExportXMLWordPrintable Details Type: Fix Status: Released (View Workflow) Priority: Major Resolution: Fixed Affects Version/s: 1.7.4, https://change.sos-berlin.com/browse/YADE-239 1.8 Fix Version/s: 1.7.5, 1.8.1, 1.9 Component/s: YADE Client Labels: ACC7551 Environment: Galadriel.sos / UK.sos-berlin.com / Japan.sos-berlin.com Description If user specifies a YADE profile i.e. file_spec https://github.com/samtools/bcftools/issues/239 = ^.*_22.01.2015\.xls$ compress_files = true for a matching file group YADE does following Find the correct file and compress it with default compressed file extension .gz i.e. ftp error SOS-100_22.01.2015.xls --> SOS-100_22.01.2015.xls.gz Transfer SOS-100_22.01.2015.xls.gz to jumphost temporary directory BUT when YADE starts the transfer from jumphost to target_host, YADE looks for original files i.e. SOS-100_22.01.2015.xls matching with file_spec=^.*_22.01.2015\.xls$, but since there is no file SOS-100_22.01.2015.xls but compressed file SOS-100_22.01.2015.xls.gz, YADE throws error Error SOSJADE_E_0100: No filename found which match the criteria as ftp error codes specified using the regular expression '^.*_22.01.2015.xls$' SOSJADE_E_0100: No filename found which match the criteria as specified using the regular expression '^.*_22.01.2015.xls$' (SOSJADE_E_0100: No filename found which match the criteria as specified using the regular expression '^.*_22.01.2015.xls$') How to reproduce user YADE CLI on Galadriel.sos YADE CLI /home/sos/sos-berlin.com/jade_client/jade_rc/bin/jade4dmz.sh -settings=/home/sos/sos-berlin.com/jade_client/jade_rc/config/jade_settings_compress_jumphost_compress_file.ini -profile=from_Galadriel_to_Japan_via_UK Issue Links is related to YADE-238 YADE should evaluate RegEx for multiple file extensions ^.*\.(xls|csv)$ when used with jump host Released Activity Ascending order - Click to sort in descending order All Comments Work Log History Activity Transitions Hide Permalink Oliver Haufe added a comment - 23 January 2015 13:14 From my point of view it makes no sense that the "jump" gets the original file_spec parameter. It should be file_spec=.* because the jump should process ALL files containing in its temporary directory. Show Oliver Haufe added a comment - 23 January 2015 13:14 From my point of view it makes no sense that the "jump" gets
Sign in Pricing Blog Support Search GitHub This repository Watch 47 Star 101 Fork 67 samtools/bcftools Code Issues 77 Pull requests 4 Projects 0 Wiki Pulse Graphs New issue error when using bcftools call and -C alleles #239 Closed jaredo opened this Issue Apr 20, 2015 · 2 comments Projects None yet Labels bug Milestone No milestone Assignees No one assigned 2 participants jaredo commented Apr 20, 2015 Hello! I cannot seem to get bcftools call with constrained alleles to work (perhaps due to my own misuse). Here is an example of the problem using 1000G data: ##create the sites file from 1000G Phase3 variants $ bcftools view -v snps -r 20:1000000-1010000 ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5a.20130502.sites.vcf.gz | bcftools query -f'%CHROM\t%POS\t%REF,%ALT\n' > sites.tsv $ head sites.tsv 20 1000000 G,A 20 1000010 A,T 20 1000065 G,A 20 1000072 A,G 20 1000128 C,A 20 1000130 T,C 20 1000152 C,T 20 1000179 A,C 20 1000204 C,T 20 1000226 A,T ###bcftools call reports inconsistent alleles $ samtools mpileup -ugf hs37d5.fa ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data/NA12878/alignment/NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam | bcftools call -C alleles -T sites.tsv -mO z -o study.vcf.gz [mpileup] 1 samples in 1 input files