Python Subprocess Error 2
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Python Filenotfounderror: [winerror 2] The System Cannot Find The File Specified
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Windowserror: [error 2] The System Cannot Find The File Specified Pytesseract
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Pytesseract Filenotfounderror: [winerror 2] The System Cannot Find The File Specified
each other. Join them; it only takes a minute: Sign up Problems using subprocess.call() in Python 2.7.2 on Windows up vote 9 down vote favorite 3 I'm trying the following and its failing with an error. I've tried to run it from Python shell/from a script/ on the windows console by invoking python on console. Nothing seems to python subprocess call stdout work. Always the same error. from subprocess import call >>>pat = "d:\info2.txt" >>> call(["type",pat]) >>>Traceback (most recent call last): File "
here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the python the system cannot find the path specified workings and policies of this site About Us Learn more about oserror: [errno 2] no such file or directory Stack Overflow the company Business Learn more about hiring developers or posting ads with us Stack Overflow Questions rpy2 windowserror: [error 2] the system cannot find the file specified Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 6.2 million programmers, just like you, helping each other. http://stackoverflow.com/questions/9531683/problems-using-subprocess-call-in-python-2-7-2-on-windows Join them; it only takes a minute: Sign up “WindowsError: [Error 2] The system cannot find the file specified” is not resolving up vote 2 down vote favorite I have created exe file of my python project by py2exe which have number of files. when i run this exe file in my system. it works fine but if i http://stackoverflow.com/questions/18757127/windowserror-error-2-the-system-cannot-find-the-file-specified-is-not-resol put it in another system then it opens login form, then after it doesn't go to next window which i have written in 2nd python file. it gives me below error in log file. Traceback (most recent call last): File "login.py", line 246, in DataReader File "subprocess.pyo", line 711, in __init__ File "subprocess.pyo", line 948, in _execute_child WindowsError: [Error 2] The system cannot find the file specified I know that it is duplicate question but I have tried many solution of stackoverflow but i didn't resolve this issue. Somebody help me for resolving this issue. And After login successfully it will go to start.py file by this code, But it is not going and giving above error. subprocess.call(["python", "./start.py"]) Thanks in advance python gtk pygtk share|improve this question asked Sep 12 '13 at 6:41 Ashish Jain 4641314 If the file is in the same directory, try removing the ./ part. –Bibhas Sep 12 '13 at 6:46 No it is giving same error after removing it and all the file
get the following output: $ python script/bootstrap.py Traceback (most recent call last): File "script/bootstrap.py", line 121, in
faq • rss Community Log In Sign Up Add New Post Question: Windows Cmd Not Responding With Python Blastall 2.2.17 0 6.0 years ago by Niek De Klein • 2.3k Netherlands Niek De Klein • 2.3k wrote: I'm using the standalone BLAST 2.2.17 with python. However, I'm having a problem with the cmd. When running the script the cmd stops responding at the 15th blast record. It doesn't matter if I change the proteins, it's always the 15th. from Bio.Blast import NCBIStandalone from Bio.Blast import NCBIXML my_blast_db = r"C:\Niek\Test2.2.17\Worm\c_elegans.protein.WS200.fasta" my_blast_file = r"C:\Niek\Test2.2.17\Worm\worm-HD.fasta" my_blast_exe = r"C:\Niek\blast-2.2.17\bin\blastall.exe" result_handle, error_handle = NCBIStandalone.blastall(my_blast_exe, "blastp", my_blast_db, my_blast_file, matrix="BLOSUM62") blast_records = NCBIXML.parse(result_handle) y = 0 #see if target is in TF list for blast_record in blast_records: if blast_record: y+=1 print y It worked normally like this earlier today and with other databases. Has anyone else had this problem/know how to fix it? Thanks, Niek Edit: I used blast 2.2.17 in command line directly (using same commands as used above) to create an xml file and read that in as result_handle. That works. @Michael's comment: from Bio.Blast.Applications import NcbiblastpCommandline my_blast_db = r"C:\Niek\Test2.2.17\Worm\c_elegans.protein.WS200.fasta" my_blast_file = r"C:\Niek\Test2.2.17\Worm\worm-HD.fasta" blastp_cline = NcbiblastpCommandline(cmd='blastp', query=my_blast_file, db=my_blast_db, evalue=0.01, outfmt=5, out="wormAll-HD.xml") print blastp_cline print blastp_cline() print blastp_cline gives: blastp -query C:\Niek\Test2.2.17\Worm\worm-HD.fasta -db C:\Niek\Test2.2.17\Worm\c_elegans.protein.WS200.fasta -out wormAll-HD.xml -evalue 0.01 -outfmt 5 When I copy that in the blast-2.2.24+ command line tool it works, but in the script it gives : File "C:/Niek/Test2.2.24/Worm/test.py", line 11, in