R Fatal Error
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using RODBC. Since this involves a proprietary ODBC driver, I'm not expecting any solution from you. However, I do hope you can give me some advice as how
R Session Aborted R Encountered A Fatal Error
to debug such an error. Here's some info: It does work in R proper R p r encountered a fatal error p the session was terminated version 3.2.2 RStudio version 0.99.489 Platform: x86_64-pc-linux-gnu (64-bit) Running under: Arch Linux Nothing is appended to the log files No error or
Install Rstudio
warning message appears in the console; the "R Session Aborted" popup appears immediately utils::sessionInfo() and RODBC::odbcDataSources() produce the same output in both R proper and RStudio RODBC in RStudio does work with other drivers I have update r mac tried the solutions mentioned in related posts Please let me know if I can provide any other information. Any advice on how to debug this is greatly appreciated. Is there for example a way to make RStudio more verbose in its output to stdout/stderr? Thank you. Best wishes, Jeroen Jeroen Janssens December 03, 2015 10:25 Share Facebook Twitter LinkedIn Google+ Please sign in to leave a comment. Date Votes 3 comments 0 Hi Jeroen, You could try attaching a debugger (e.g. gdb or lldb) to the rsession process, to see if you get a useful stack trace when RStudio crashes.You should (hopefully) be able to get a stack trace with something like: Launch RStudio, Launch lldb in the terminal, Run ‘attach —name rsession’ in the lldb REPL, Allow the rsession to continue execution by pressing ‘c’, Run through the steps that cause RStudio to crash, Type ‘bt’ to print the backtrace from the lldb REPL. If you’re able to retrieve a stack trace, we may be able to discover the underlying issue. Thanks,Kevin Kevin Ushey December 03, 2015 18:23 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 Thanks, Kevin! I followed your instructions and got the following stack trace: https://gist.github.com/jeroenjanssens/549087b0fd6551064e57 It's probably worth reiterating that this does work in R proper. Again, since this involves a proprietary package and ODBC driver, I'm not expecting any solution, but if you do happen to spot the issue by looking at the stack trace then that would be awesome. Thanks, Jeroen Jeroen Janssens January 05, 2016 14:43 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 Hi Jeroen, Based on the stack trace, it looks like somethin
Can you please let me know how to fix it? - RStudio Version 0.99.902 - Window 7 Enterprise 32bits - R version 3.3.0 (2016-05-03) Copyright (C) 2016 The R Foundation for Statistical ComputingPlatform: i386-w64-mingw32/i386 (32-bit) Thanks Assinatura do problema: Nome do Evento de Problema: APPCRASH Nome do Aplicativo: rsession.exe Versão do Aplicativo: 0.99.902.0 Carimbo de Data/Hora do Aplicativo: 09452e80 Nome do Módulo de Falhas: mirt.dll Versão do Módulo de Falhas: 0.0.0.0 Carimbo de Data/Hora do Módulo de Falhas: 57660643 Código de Exceção: 40000015 Deslocamento de Exceção: 00039530 Versão do sistema operacional: 6.1.7601.2.1.0.256.4 https://support.rstudio.com/hc/en-us/community/posts/207601737-How-to-debug-a-fatal-error- Informações Adicionais 1: 1f52 Informações Adicionais 2: 1f52760b759e1b6b5f5aa6929bac40ff Informações Adicionais 3: dabe Informações Adicionais 4: dabe075bb63064452b470a78971ee2c6 João Favero June 21, 2016 19:35 Share Facebook Twitter LinkedIn Google+ Please sign in to leave a comment. Date Votes 3 comments 0 Hi João, Can you confirm where exactly the error is occurring? Does it occur simply when you attempt to load the package with e.g. library(mirt) Or does https://support.rstudio.com/hc/en-us/community/posts/212440887-R-encountered-a-fatal-error it occur when running some code in the package? Can you provide a reproducible example? You might also try reinstalling the package + its dependencies, e.g. db <- available.packages()deps <- tools::package_dependencies("mirt", db)$mirtinstall.packages(deps)install.packages("mirt") You might also try running with the 64 bit version of R, rather than the 32 bit version. Thanks,Kevin Kevin Ushey June 22, 2016 19:28 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 Another user reported this recently as well, running 32-bit R/Rstudio. The problem seems to disappear after upgrading to the 64-bit versions. Phil Chalmers July 04, 2016 11:13 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 Hi Phil, Thanks for confirming the issue -- unfortunately, it looks like there is an ugly interaction between 32bit versions of R 3.3.0+, and RStudio. We're aware of the issue and hope to have a resolution soon; hopefully using 64bit R in the interim is a reasonable alternative! If you absolutely need to use a 32bit version of R alongside RStudio, I can only recommend that you stick with R 3.2.x for now. Thanks, and sorry for the trouble,Kevin Kevin Ushey July 06, 2016 17:02 0 votes Share Facebook Twitter LinkedIn Google+ Permalink Powered by Zendesk
here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring http://stackoverflow.com/questions/34350652/fatal-error-while-using-rcpp-in-rstudio-on-windows developers or posting ads with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 6.2 million programmers, just like you, helping each other. Join http://stackoverflow.com/questions/31945441/summary-function-causing-a-fatal-error-in-rstudio them; it only takes a minute: Sign up Fatal Error while using Rcpp in RStudio on Windows up vote 0 down vote favorite I'm trying to use Rcpp on Windows in RStudio. I have R version 3.2.3 and I fatal error have installed the Rcpp package. The problem is that I am unable to call any functions defined through the CPP code. I tried the following (picked up from an example online). body <- ' NumericVector xx(x); return wrap( std::accumulate( xx.begin(), xx.end(), 0.0));' add <- cxxfunction(signature(x = "numeric"), body, plugin = "Rcpp") This gives the following warning, but completes execution successfully. cygwin warning: MS-DOS style path detected: C:/R/R-32~1.3/etc/x64/Makeconf Preferred POSIX equivalent is: /cygdrive/c/R/R-32~1.3/etc/x64/Makeconf CYGWIN environment variable option "nodosfilewarning" turns off r encountered a this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames When I try to use the above function, x <- 1 y <- 2 res <- add(c(x, y)) I get the following error : R Session Aborted R encountered a fatal error. The session was terminated. Any suggestions? This same 'Fatal Error' happens for any code that I run with Rcpp. r windows rcpp share|improve this question edited Dec 18 '15 at 8:20 Roland 74.2k463103 asked Dec 18 '15 at 7:41 yaitzme 163 Which version of Rtools do you have installed? Which Rcpp version are you using? –Roland Dec 18 '15 at 8:02 RTools version is 33, Rcpp version is 0.12.2 –yaitzme Dec 18 '15 at 8:15 My advice is to use Rtools32. Rtools 33 is not stable. –Qiang Kou Dec 19 '15 at 3:17 add a comment| 1 Answer 1 active oldest votes up vote 1 down vote Try rebuilding locally, starting with Rcpp. This is valid code and will work (and the hundreds of unit tests stress may more than this). Sometimes the compiler or something else changes under you and this sort of thing happens. It is then useful to have an alternative build system -- eg via Travis at GitHub you get Linux for free. Also, learning about Rcpp Attributes. Your example can be written as R> library(Rcpp) R> cppFunction("double ad
here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site About Us Learn more about Stack Overflow the company Business Learn more about hiring developers or posting ads with us Stack Overflow Questions Jobs Documentation Tags Users Badges Ask Question x Dismiss Join the Stack Overflow Community Stack Overflow is a community of 6.2 million programmers, just like you, helping each other. Join them; it only takes a minute: Sign up summary() function causing a fatal error in RStudio? up vote 3 down vote favorite I am trying to run a simple summary() of a logisitic glm and repeatedly get a fatal error in RStudio. I was able to run this same code flawlessly yesterday and beginning yesterday evening I kept getting the fatal error bomb. The glm was constructed on roughly 2.6 million rows with 100+ variables. Once the glm is constructed, the R environment is consuming 21.8GB of my 64GB of RAM. I have tried updating all of my packages that are loaded in the environment when the error occurs but I'm not sure that is even necessary since the error occurs on such a basic R function. Below is the session info. # R version 3.2.1 (2015-06-18) # Platform: x86_64-w64-mingw32/x64 (64-bit) # Running under: Windows 7 x64 (build 7601) Service Pack 1 # locale: # [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 # [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C # [5] LC_TIME=English_United States.1252 # attached base packages: # 1] stats graphics grDevices utils datasets methods base # loaded via a namespace (and not attached): # [1] tools_3.2.1 UPDATE: I was away from my workstation for roughly 1 hour and 15 minutes and the summary() function now works without crashing RStudio. Now the question becomes: why does this sort of thing happen in the first place? r rstudio fatal-error share|improve this question edited Aug 11 '15 at 16:54 asked Aug 11 '15 at 15:05 alwaysnew 265 5 Do you get the error if you run the code just using RGui? –Dason Aug 11 '15 at 15:08 Granted this is coming after my update above but, no, I did not get an error when running in the RGui. &ndash