Error Tcl/tk Support Is Not Available On This System
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Error while installing R packages : Tcl/Tk support is not available on this system up vote 2 down vote favorite I am using Linux- fedora 14 64 bit machine. While installing some of R packages , eg : DEGseq and sqldf , I am facing this error. I manually install all tcl and tk devel and core libraries using yum but the problem tcltk r mac still persisting. The error i am encountering while installing packages: Warning: S3 methods ‘$.tclvar’, ‘$<-.tclvar’, ‘as.character.tclObj’, ‘as.character.tclVar’, ‘as.double.tclObj’, ‘as.integer.tclObj’, ‘as.logical.tclObj’, ‘as.raw.tclObj’, ‘print.tclObj’, ‘[[.tclArray’, ‘[[<-.tclArray’, ‘$.tclArray’, ‘$<-.tclArray’, ‘names.tclArray’, ‘names<-.tclArray’, ‘length.tclArray’, ‘length<-.tclArray’, ‘tclObj.tclVar’, ‘tclObj<-.tclVar’, ‘tclvalue.default’, ‘tclvalue.tclObj’, ‘tclvalue.tclVar’, ‘tclvalue<-.default’, ‘tclvalue<-.tclVar’, ‘close.tkProgressBar’ were declared in NAMESPACE but not found Error : .onLoad failed in loadNamespace() for 'tcltk', details: call: fun(libname, pkgname) error: Tcl/Tk support is not available on this system Error : package/namespace load failed for ‘tcltk’ Error : unable to load R code in package ‘gsubfn’ ERROR: lazy loading failed for package ‘gsubfn’ * removing ‘/home/xuserL/R/x86_64-unknown-linux-gnu-library/2.15/gsubfn’ ERROR: dependency ‘gsubfn’ is not available for package ‘sqldf’ * removing ‘/home/xuser/R/x86_64-unknown-linux-gnu-library/2.15/sqldf’ I am unable to find the solution even after googling about this error. Please tell me the set of steps i need to follow in order to sort out this problem? Thanks in advance :) r installation share|improve this question asked Dec 14 '12 at 5:57 bioinformatician 81719 Check out: code.google.com/p/sqldf/#Troubleshooting –G. Grothendieck Dec 14 '12 at 23:11 1 Thank you G. Grothendieck ! After installing dev packages for tcl and tk on my linux machine, i recompile the
available on this system. Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] >-----Original Message----- >From:
R Tcltk Package Documentation
r-help-admin at stat.math.ethz.ch >[mailto:r-help-admin at stat.math.ethz.ch] On Behalf Of Peter Dalgaard BSA
Tcltk2 R Tutorial
>Sent: Tuesday, February 11, 2003 9:03 AM >To: Forbeck, Doug (NIH/NCI) >Cc: R-help at stat.math.ethz.ch >Subject: Re: [R] tcl/tk library not available Tcl/Tk support is not available on this system. > > >"Forbeck, Doug (NIH/NCI)"
this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Tcl\tk not http://r.789695.n4.nabble.com/Tcl-tk-not-supported-on-this-system-td864320.html supported on this system In trying to install the pbatR package, I was greeted with the error Error: package 'tcltk' does not have a name space http://grokbase.com/t/r/r-help/032bgv6143/r-tcl-tk-support-is-not-available-on-this-system Execution halted Directly installing the package tcltk2 returned the following error: Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support not available is not available on this system I have seen from previous posts that tcl/tk must be present when R is installed. I tried reinstalling R from source using ./configure make and although the installation went fine I received the same errors. Typing rpm -qa|grep tcl returns: tclx-8.3.5-4 tcl-8.4.7-2 tcl-8.4.7-2 Typing rpm -qa|grep tk is not available returns: gtkspell-2.0.7-2 atk-1.8.0-2 gtk+-1.2.10-33 gtk2-2.4.13-22 authconfig-gtk-4.6.10-rhel4.3 gtkhtml2-2.6.2-1 gtk-engines-0.12-6.el4 tk-8.4.7-2 gtksourceview-1.1.0-4 gtk-engines-0.12-6.el4 tk-8.4.7-2 gnome-python2-gtkhtml2-2.6.0-3 gtkglarea-1.2.2-16 gtk2-engines-2.2.0-7.el4 gtkhtml3-3.3.2-6.EL usermode-gtk-1.74-1 atk-1.8.0-2 gtk2-2.4.13-22 pygtk2-libglade-2.4.0-1 gtk+-1.2.10-33 gtkhtml2-2.6.2-1 pygtk2-2.4.0-1 So it seems that tcl and tk are present on the system. I saw a post suggesting that I may need some development packages? What is a good place to find these packages? I am running R version 2.5.1 on a Linux machine running Redhat Enterprise 3. Let me know if you need any more info on the operating system and if there are any ideas on how to resolve these issues. Thanks, Michael Gormley [[alternative HTML version deleted]] ______________________________________________ [hidden email] mailing list https://stat.ethz.ch/mailman/listinfo/r-helpPLEASE do read the posting guide http://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code. Bernardo Rangel tura Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: Tcl\tk not supported on this system Em Sex, 2008-08-08 às 1
Hat 8 system, I am running R version1.6.2 with Tcl/Tk version 8.3.5 installed. When I try to test R from thedata_sets directory I get the error message;Error in firstlib(which.lib.loc, package) :Tcl/Tk support is not available on this systemError in fileBrowser(textToShow = "Choose one CDF file" , nSelect = 1, :tcl/tk library not availableExecution halted.Any help would be appreciated.Doug Forbeck reply Tweet Search Discussions Search All Groups r-help 3 responses Oldest Nested Peter Dalgaard BSA 8.3.5 is not stock RH8 is it? I have 8.3.3. My best guess is that something went wrong during the build of R. Make sure that the configure process figures out where to find the Tcl/Tck header files and libraries. -- O__ ---- Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907 Peter Dalgaard BSA at Feb 11, 2003 at 4:06 pm ⇧ "Forbeck, Doug (NIH/NCI)"